Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq143 174 3e-38 >seq143 Length=298601 Score = 174 bits (192), Expect = 3e-38 Identities = 558/855 (65%), Gaps = 20/855 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || |||||||||||||||||||| | ||| ||||||||||| ||| | || Sbjct 57657 GAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGAC 57716 Query 25534 CTGGCCAAGGACATG-GACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 || || ||||||| | | | | | | || || || |||||| |||| || ||| Sbjct 57717 CTCTCCCAGGACATCCGCCAGTTCGAA-GCCCTCACCCCCGACGAGAAGCACTTCATCAC 57775 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || || || || |||||||| || | Sbjct 57776 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTAGAGAATCTCGCCGGTGG 57835 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCA 25711 |||| | ||| || ||| || |||||| ||| |||||||| |||||||| |||| Sbjct 57836 GTTCATGAAGGAGGTCCAGGTCGCGGAGGCGC-GTGCCTTCTACGGCTTCCAGATCGCCA 57894 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 |||| || | ||||| || |||| | || || ||| ||||| | || || Sbjct 57895 TCGAGAACATCCACTCCGAAATGTACAGCCTCCTCCTCGAGACCTACATCAAGGATTCCG 57954 Query 25772 CCGAGAGAGATCGGC-TGTTTGGTGCCATCGAGCACATACCCA-GCATCAAGAGGAAGGC 25829 |||||| ||| | || | || | |||||||| ||| ||| || || || |||||| Sbjct 57955 CCGAGA-AGAGCCGCCTCTTCCGCGCCATCGA-CACTGTCCCTTGCGTCGCGAAGAAGGC 58012 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||||| | |||||| || || | ||| || || |||||| || | | Sbjct 58013 CCAGTGGGCCCTCCGCTGGATCGACGGCTCCGAGTCCTTCGC----CGAGCGCCTCATCG 58068 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 |||| || ||| || || || ||||| ||| ||| || |||| ||||||||||||| Sbjct 58069 CCTTCGCCTGC-GTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCG-CCATCTTCTGGCT 58126 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || ||| ||||| || || ||| ||||||||| | ||| | ||||| Sbjct 58127 AAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAACGAGTTGATCTCGCGAGACGA 58186 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 ||| | ||| | ||||| || ||||| || ||| | | || || | || | Sbjct 58187 GGGCTTGCACTGCGATTTCGCGTGCCTTCTGTACTC--ACTAC-TGAGGAAGAAGCTGAG 58243 Query 26067 TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | ||| ||| | | ||| || || || ||||||||||||| ||||||| Sbjct 58244 CGAGGAGCGGGTCAAGGGGATCGTCCGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTG 58303 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 |||| |||||| ||| |||||||| ||||| || Sbjct 58304 CGACGCGCTGCCGTGCGCGTTGGTGGGGATGAACCGGGAACTGATGAGCCAGTACATCGA 58363 Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAA 26246 | ||| ||||| | || ||| | ||| || || | | ||| | || || Sbjct 58364 ATTTGTCGCCGATCGGCTTCTGGGTGCGCTAGGGTGCGGGAAGGTGTACGGAGTGCAGAA 58423 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 |||||| || | ||||| ||||||||| | ||||||||||||||||| || ||||| Sbjct 58424 CCCGTTTGATTGGATGGAGCTGATATCGTTGCAGGGGAAGACCAACTTCTTCGAGAAGAG 58483 Query 26307 GGTCGGCGACTATCA 26321 |||||| || || || Sbjct 58484 GGTCGGTGAGTACCA 58498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928519762372800