Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq716 197 1e-45 seq257 149 6e-31 seq964 116 4e-21 seq139 93.3 4e-14 seq2 93.3 4e-14 seq272 89.7 5e-13 >seq1 Length=1764766 Score = 233 bits (258), Expect = 2e-56 Identities = 258/344 (75%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 10484 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 10543 ||||||| ||||| || ||||| |||||||| |||||||| || |||||||| || ||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 10544 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 10603 || |||||||| ||||||| | ||| | |||||||||||| | |||||||| || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 10604 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 10663 ||| | |||| | || ||||| | | ||||| ||| | ||||| ||||| || || Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 10664 TTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 10723 || || |||||||| ||| | || | |||||||||||||||||||| | ||| || || Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 10724 AATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAA 10783 ||||| || | ||||| ||| ||||||| |||||||| | || || || || ||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 10784 AGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACT 10827 | |||| | ||||| || || ||||| || | || || || || Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 197 bits (218), Expect = 1e-45 Identities = 211/279 (76%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||||| || ||||| |||| ||||||| |||| |||| || || |||||||| Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 | | ||||| |||||||| || | ||| | ||||| |||||||| |||||||| || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || || |||||||| | || || ||| || | | | ||||| |||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| || | || |||| ||||||||||| || ||||| || || ||||| || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGC 8987 ||||||||| || ||||| || ||||||||||||||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 149 bits (164), Expect = 6e-31 Identities = 243/350 (69%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 10196 AATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCA 10255 ||||| ||||| || || | || |||| ||||||||| ||| ||||| || |||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 10256 CTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTC 10315 || |||| | ||||||||||||| || | ||| || || || || || || || ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 10316 CTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTT 10375 | || || |||| || ||| |||||||||| | || | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 10376 GCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACA 10435 || | || |||| | || | |||| || || || | || ||||||| || Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 10436 CTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAA 10495 | | | |||||| || | ||| || ||| ||||| | |||||| ||| Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 10496 GAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGG 10545 | || ||||| |||||||| |||||| | || |||||||| || ||||| Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq964 Length=67008 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 10521 ACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCT 10580 |||| || |||||||| || ||||| ||| |||| ||||||||| ||| | ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 10581 TTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTG 10640 ||||| | ||| |||| || | ||| | | || | || ||||| | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 10641 CTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTG 10700 || | ||| | ||||| || || || || |||||||| ||| | | |||||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 10701 AATTTGAGA 10709 ||||||||| Sbjct 23599 AATTTGAGA 23607 >seq139 Length=308073 Score = 93.3 bits (102), Expect = 4e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 ||||||||||||||| ||||||||| || || || || ||||| |||||||| ||| Sbjct 89682 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGT 89741 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCT 8664 |||||| || ||||||||||| |||||| || Sbjct 89742 TGCATATTCAGCTCCTGTTGCAGCTGCTACT 89772 >seq2 Length=1456787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/135 (76%), Gaps = 7/135 (5%) Strand=Plus/Plus Query 8925 AGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATA 8984 ||| ||||| || || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 8985 TGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGG 9044 ||| | ||| |||| || || |||||| | ||||| |||||||| ||||| Sbjct 1455466 TGC-TAGTTTCCTCGTTCT------TTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 9045 AATCTGGTTTACCGC 9059 || ||||||||||| Sbjct 1455519 TATTTGGTTTACCGC 1455533 >seq272 Length=206342 Score = 89.7 bits (98), Expect = 5e-13 Identities = 276/425 (65%), Gaps = 8/425 (2%) Strand=Plus/Minus Query 10031 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAG 10090 |||||| | | |||| |||| |||||| | || | ||||| || ||| || Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 10091 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATG 10150 | | || || ||| ||||||| | || || || ||| |||| || |||| Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 10151 TTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTAT---CGCG 10207 ||||| || ||||| || || ||| || | | ||||| ||| ||| | | Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTATCCTTATAATATTATAATCACA 146894 Query 10208 TTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCT 10267 || || | || |||| |||||||| ||| ||| | || ||||| | | |||||| Sbjct 146893 TTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTCT 146834 Query 10268 AGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTC 10327 |||| ||| | || ||||| |||| | || || || || || ||||| || Sbjct 146833 ----GGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTC 146778 Query 10328 CAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTG 10387 || || ||||||||||||| | || || || || ||||||||||||||||| || | Sbjct 146777 CAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTA-TT 146719 Query 10388 GGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGAT 10447 | | || || |||| || ||||| || | | ||||| || || | | | ||||| Sbjct 146718 AGTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAGAT 146659 Query 10448 GGCGA 10452 || || Sbjct 146658 GGTGA 146654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516299264280000