Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq264 167 2e-35 seq85 152 3e-31 seq657 116 2e-20 seq1067 104 2e-16 seq353 100 2e-15 seq114 100 2e-15 seq168 87.8 1e-11 seq1142 86.0 4e-11 >seq264 Length=208598 Score = 167 bits (184), Expect = 2e-35 Identities = 530/805 (66%), Gaps = 20/805 (2%) Strand=Plus/Minus Query 475363 AGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCA 475420 ||| |||||||| || | || | || |||||||||||||| || || | || |||| Sbjct 83744 AGCTACAGCTGGTGACACCCACTTGGGCGGTGAAGATTTTGACAACAGGATGGTGAATCA 83685 Query 475421 TGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTT--TCAACATCTGCTAAAG 475478 | | |||| | || ||||||||||| | || || || | | | | | | || Sbjct 83684 T--TTTGTTCAGGAGTTCAAGAGGAAGCACAAGAAGGACATTAGTGGAAACC--CCAGAG 83629 Query 475479 CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTC 475538 ||||||| | | |||||||||||||| | || ||| | |||| || || || ||| Sbjct 83628 CATTAAGGAGATTAAGAACTGCTTGTGAGAGAGCCAAGAGGACTCTCTCATCAACTGCTC 83569 Query 475539 AAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAA 475598 |||| || ||||| ||||||||||||| || || || |||| | || ||| || Sbjct 83568 AAACCACCATTGAAATTGATTCTCTTTTCGAGGGCATCGATTTCTACACGACTATCACTC 83509 Query 475599 GGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAAC 475658 |||| ||| || || | |||||||| || || || || || || ||| Sbjct 83508 GGGCCCGATTCGAGGAGCTCAACATGGATCTCTTCAGGAAGTGTATGGAGCCAGTGGAAA 83449 Query 475659 AAGTTCTCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGA 475717 || | | || ||| |||| | ||||| | || |||||||| | ||||| || || Sbjct 83448 AATGTTTGAGGGATGCTAAGATGGACAAGAGCA-GTGTCCATGATGTGGTTCTAGTTGGT 83390 Query 475718 GGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAA 475776 || || || || || || || | | || || || || | | ||| ||||| || | Sbjct 83389 GGGTCTACTAGGATCCCTAAGGTTCAACAATTG-TTGCAGGACTTTTTCAATGGAAAGGA 83331 Query 475777 GTTAAATGAAAGTG--TAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834 | | || ||| | | || || || || || ||||| ||||| || |||||||| ||| Sbjct 83330 GCT--GTGCAAGAGCATCAACCCCGACGAGGCAGTTGCTTATGGTGCCGCTGTCCAGGCA 83273 Query 475835 GCTAT-TTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTT-GACGTAA 475892 || || ||| | ||| | ||||||| | | | || | ||||| || || | Sbjct 83272 GCAATCCTTAGC-GGTGAGGGTAACGAGAAGGTGCAAGACCTTCT-GTTGTTAGATGTCA 83215 Query 475893 CTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAA 475952 |||| || || | || | ||||| | ||||| | ||||| || ||| |||| Sbjct 83214 CTCCTCTGTCCCTTGGATTGGAAACTGCAGGAGGTGTGATGACAGTACTAATTCCAAGAA 83155 Query 475953 ATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAA 476012 | || | ||||| ||| ||| | || || ||||| ||||| ||||| ||| | Sbjct 83154 ACACCACAATCCCTACCAAGAAAGAGCAGGTGTTCTCCACCTATTCCGATAACCAACCTG 83095 Query 476013 CTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTG 476072 ||| |||||| | | || |||||| || || || || || ||| || | Sbjct 83094 GTGTGCTGATCCAAGTGTACGAGGGTGAACGAGCTAGAACCAAGGACAACAACTTGCTCG 83035 Query 476073 GAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTA 476132 | | ||| | || || |||||||||||||| ||||||||||| ||||| | || Sbjct 83034 GCAAATTTGAGCTCTCTGGCATTCCTCCTGCTCCTAGAGGAGTTCCACAAATCAATGTCT 82975 Query 476133 CTTTTGATATTGATGCAAATGGTAT 476157 ||||| ||||||||||||||||| Sbjct 82974 GCTTTGACATTGATGCAAATGGTAT 82950 >seq85 Length=391096 Score = 152 bits (168), Expect = 3e-31 Identities = 448/678 (66%), Gaps = 12/678 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 |||||||| || | || ||| | |||| || || || | ||||| ||| | ||| || Sbjct 94255 ACTGCTTGCGAGAGAGCGAAGAGGACTCTGTCATCCACTGCCCAAACCACTATCGAAATT 94314 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||||| | | | ||||| | |||| |||||| || Sbjct 94315 GATTCTCTCTATGAGGGTATTGATTTCTACTCACCCATTACCCGTGCTAGATTTGAGGAG 94374 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT-TCTCAGAGATTC 475674 | ||||| || || || || || ||||| || |||| | | |||||| | Sbjct 94375 CTCAACATGGATCTATTCAGGAAGTGTATGGAGCCCGTGGAG-AAGTGTTTGAGAGATGC 94433 Query 475675 TAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTC 475733 ||| | ||||| | ||| || ||||| |||||||||| ||||||||||| ||||||| Sbjct 94434 TAAGATGGACAAGAGCACT-GTTCATGATGTTGTTCTTGTCGGAGGTTCAACCAGAATTC 94492 Query 475734 CAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTA 475792 | || | || | || || | | || || || || || | || ||| ||| Sbjct 94493 CCAAGGT-TCAGCAGCTGTTGCAGGACTTCTTCAACGGAAAGGAGCT--CTGCAAGAGTA 94549 Query 475793 --AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTC 475850 || || ||||| |||||||| || || ||||||||||| || ||||| || ||| Sbjct 94550 TCAACCCAGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAGGCTGCTATCTTGAGCGGTG 94609 Query 475851 AATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTC 475910 || | | ||||| | | || | | || | || || ||||| || || | ||| Sbjct 94610 AAGGAAATGAGAAGGTTCAGGATCTGTTGCTGTTGGATGTTACTCCTCTGTCTCTTGGTT 94669 Query 475911 TTGAAACAGTTGGAGGGATTATGACTAATCTT-ATTGACAGAAATACTCCTATCCCATGC 475969 | || || | |||||| ||||||| |||| ||| ||| || || ||||||| | Sbjct 94670 TGGAGACTGCTGGAGGTGTTATGAC-CGTCTTGATTCCCAGGAACACAACTATCCCGACC 94728 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 || || |||| || || || || || || || || | ||| ||||| | Sbjct 94729 AAGAAGGAGCAAGTGTTCTCTACCTACTCAGACAACCAGCCCGGTGTGCTTATCCAGGTT 94788 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | || ||||| ||| || | || || || || || | || | ||| Sbjct 94789 TACGAGGGTGAGAGAGCTAGAACCAGGGACAACAATCTGCTGGGTAAATTCGAGCTTTCT 94848 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| || ||||||||||| |||||||| || ||| ||| ||||||||||| Sbjct 94849 GGCATTCCACCGGCTCCCAGAGGTGTTCCTCAGATCACTGTTTGTTTCGATATTGATGCT 94908 Query 476150 AATGGTATTCTTAATGTT 476167 || |||||||| |||||| Sbjct 94909 AACGGTATTCTGAATGTT 94926 >seq657 Length=102741 Score = 116 bits (128), Expect = 2e-20 Identities = 264/386 (68%), Gaps = 22/386 (6%) Strand=Plus/Minus Query 475364 GCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCAT 475421 || || || || ||| | ||||| || ||||| ||||||||||| || || || |||| Sbjct 15317 GCCACGGCGGGTGATACGCATCTCGGAGGTGAGGATTTTGATAACAGGCTCGTCAATCAC 15258 Query 475422 GGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTT--CAACATCTGCTAAA 475477 |||| | || ||||||||||| | || || ||| | |||| || | | Sbjct 15257 TTTGTGGCGGAG--TTCAAGAGGAAGCACAAGAAGGACATCAGTGGCAAC----GCCAGA 15204 Query 475478 GCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACT 475537 || || || | | ||||||||||| || | || ||| || |||| ||||| | ||| Sbjct 15203 GCCTTGAGGAGGTTGAGAACTGCTTGCGAGAGGGCCAAGAGAACTCTGTCTTCCACCACT 15144 Query 475538 CAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTC--TTATTA 475595 ||||| ||| ||||| | ||||| || | ||||| || ||| | ||||| |||| Sbjct 15143 CAAACCACTATTGAAATCGATTCGCTCTACGAAGGGATCGAT--TTCTACTCGACAATTA 15086 Query 475596 CAAGGGCTAAATTTGAAGATATTTGTTC--TGATCTCTTTAGAAAAACAATTGAACCCGT 475653 | || |||| ||| |||| | ||| | || | |||||||| || || || | Sbjct 15085 CTAGAGCTAGATTCGAAG--AGTTGAACATGGACTTGTTTAGAAAGTGTATGGAGCCTG- 15029 Query 475654 TGAACAAGT-TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTG 475712 || | |||| ||| || ||||| || ||||||| ||||| ||||| | ||||||| Sbjct 15028 TGGAGAAGTGTCTGAGGGATTCGAAGATTGACAAGAGCCAAGTTCATGACGTGGTTCTTG 14969 Query 475713 TAGGAGGTTCAACAAGAATTCCAAAA 475738 | || || || || || ||||| ||| Sbjct 14968 TCGGCGGGTCGACCAGGATTCCGAAA 14943 >seq1067 Length=57296 Score = 104 bits (114), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || ||||| ||||| || ||| || | |||||||| || ||||| || Sbjct 37178 AGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCAAGAGTCCTA 37237 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || || || ||||| ||||| || || || || ||||| || ||||| ||| Sbjct 37238 CCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCC 37297 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||||||||||||| ||||| ||||| || || | | | | | |||||||| Sbjct 37298 TTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCA-CCTCAAGGGT 37356 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| || ||||| || Sbjct 37357 GATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTG 37392 >seq353 Length=174248 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| ||||| || ||||| |||||| | ||| | |||||||| |||||||| Sbjct 14585 GCTGTTATTACGGTTCCGGCTTATTTCAATGATGCCCAAAGACAAGCAACAAAAGATGCT 14526 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||||||||| ||| |||| | ||||| ||||| ||||| || || || ||| Sbjct 14525 GGCAGAATTGCAGGCCTTGATGTGCAGAGGATTATCAATGAGCCAACTGCTGCTGCCCTT 14466 Query 474857 GCTTATGG 474864 |||| || Sbjct 14465 TCTTACGG 14458 Score = 91.5 bits (100), Expect = 1e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 ||| || ||||| ||||| ||||| || |||||||| ||||||||| | | | ||| Sbjct 14472 AGCAGCAGTTGGCTCATTGATAATCCTCTGCACATCAAGGCCTGCAATTCTGCCAGCATC 14531 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTTT 290959 | ||||| || | ||| |||||||| |||||||| || || ||||||||||| ||| Sbjct 14532 TTTTGTTGCTTGTCTTTGGGCATCATTGAAATAAGCCGGAACCGTAATAACAGCCTTT 14589 >seq114 Length=338572 Score = 100 bits (110), Expect = 2e-15 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 321775 ATGTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTCAGTG-CAATATTTGGA 321833 ||||||||||| ||||||| | |||| | || | |||| ||| || ||| ||||| Sbjct 179602 ATGTAAGATTTAATGCAATACTCCATGGCACTCCTAATTCA-TCAATGTTAATGGTTGGA 179660 Query 321834 TCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTA 321893 |||| |||||||||||||| |||| | ||| |||||||| ||||| | || |||||| Sbjct 179661 TCAGGGGTGATAACTGTACGTGCAGAAAAATCCACACGTTTCCCCATCAAGTTCCCTCTA 179720 Query 321894 ATACGACCTTCTTT 321907 || |||||||| || Sbjct 179721 ATTCGACCTTCCTT 179734 >seq168 Length=274740 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || ||||| || || ||| || || | ||| || || || || || Sbjct 145707 ACGGAGGCGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGT 145766 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || || || || ||||| ||||| ||||| || | || || || |||||||| || Sbjct 145767 CCTCCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCC 145826 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 |||||||| ||||||||| || ||| || || || || | | | | | | ||| Sbjct 145827 CTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTGTCCGAGCTCTCGACCTCCAA 145886 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || || || |||||||| |||||||||||||| || Sbjct 145887 GG-TGATGGTCTTCCCGGTGAGGGTCTTAACGAAAATCTG 145925 >seq1142 Length=50851 Score = 86.0 bits (94), Expect = 4e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 || ||||| || || ||||| || |||||||||||| |||| |||||||||||||| || Sbjct 889 GACTTTTCGTCGCCTAATATAGCCAAGGAAATGCATGTTGGTCACTTGAGATCTACCATT 948 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATG-TGAAGTACAAAGAATAAA 817218 ||||| || | ||| | | || | ||| |||| ||| ||| || | | || || Sbjct 949 ATTGGGGATGCACTTGCTCGTATGTTTGAGTTTT-CAAATGTTGATGTCCTACGACGGAA 1007 Query 817219 TCATATTGGTGATTGGGGAACACA 817242 ||| ||||||||||||| || || Sbjct 1008 CCATGTTGGTGATTGGGGGACGCA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266978358618260