Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1 206 3e-48 seq716 181 1e-40 seq257 140 4e-28 seq272 132 5e-26 seq1194 111 2e-19 seq964 102 9e-17 seq269 87.8 2e-12 seq139 86.0 7e-12 >seq1 Length=1764766 Score = 206 bits (228), Expect = 3e-48 Identities = 258/354 (73%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 162776 ATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTC 162835 |||| || | || || | |||||||| ||||| |||||||| || |||||||| ||||| Sbjct 983310 ATTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 983251 Query 162836 ACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGT 162895 || || || || |||||||| || || ||||||| |||||||||||| | ||||| Sbjct 983250 CCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 983191 Query 162896 TCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCG 162955 || || | ||| | |||| ||| || | || | | || || ||| | ||||| || Sbjct 983190 ACCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACG 983131 Query 162956 TGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTT 163015 ||| || ||||| || ||||||||| | ||||| || ||||| ||||| |||||||| | Sbjct 983130 TGCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTG 983071 Query 163016 CTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCA 163075 ||| || || || ||||| | || || || |||| || ||| | || | || || Sbjct 983070 CTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 983011 Query 163076 ACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||||| |||||| | |||||||| ||||| | | | || |||||||| Sbjct 983010 GCCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 181 bits (200), Expect = 1e-40 Identities = 205/275 (75%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 161341 ATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 161400 |||||||| || |||||| |||| ||||||| ||| |||| || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 161401 ATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 161460 || || |||||||| || | |||| | || ||||| ||||| || ||||| || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 161461 AGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAG 161520 ||||| || || ||||| |||| |||||| || | | ||||||| ||||| || Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 161521 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCC 161580 || || | ||||||| ||||||||||| ||||| ||||| || || || || || Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 161581 CACGGGTACTTCGGTCGTCTGATTTTCCAATACGC 161615 || || || || || || |||| |||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 140 bits (154), Expect = 4e-28 Identities = 246/355 (69%), Gaps = 5/355 (1%) Strand=Plus/Minus Query 162498 AATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCT 162557 ||||| || || ||||| | ||| |||| ||| || ||| ||| || || || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 162558 TTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTC 162617 | || || | |||||||| ||||| || || || ||||| || || |||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 162618 CTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTA 162677 | || || |||||||||| |||| ||||| | || | |||||||||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 162678 GC--AGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATA 162735 || |||||| | |||| ||| |||| | ||||||||||| || | ||||||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 162736 CACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGG 162795 | | | ||||||| || | ||| || || | ||| || | || || | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 162796 AAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGAT-TTTCGGTA 162849 || |||| ||||| |||||||| || ||| |||| ||||| || || ||| |||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGGGTA 14133 >seq272 Length=206342 Score = 132 bits (146), Expect = 5e-26 Identities = 347/518 (67%), Gaps = 20/518 (4%) Strand=Plus/Minus Query 162248 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCA---AACTTTCTTA-CTGCG 162302 ||||||||| ||| | || ||||||||| | || || | | ||||| |||| ||| Sbjct 147162 GTATACTCATGGATTAGCAAGTTCCTATTTGGAAGGATATATGTAACTT-CTTAGCTGTC 147104 Query 162303 GCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAG 162362 | |||||||||| | | | | | |||||| | || | ||||||| |||||| Sbjct 147103 ATAATTTCTACTCCCGTTAATAGTTTAGCACATTCTTTAATGTTACTATGGGATCCTGAA 147044 Query 162363 TCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTC 162422 | ||| | || || | || ||||| ||| | | || || ||||||||||| | || Sbjct 147043 GCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGGACTTTTGTTGTTCTT 146984 Query 162423 CACGGAGCCTTTGC--ACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTT 162479 || | || ||| | ||| |||||||| | | || || |||||||| || ||| || Sbjct 146983 CATG--GCATTTTCAAACTAATAGGTTTTACATTACGTCAATTTGAACTTGCTCGATCTG 146926 Query 162480 ATCGGTATTCGTCCTTACAATGCT---ATTGCTTTCTCAGGTCCTATTGCTGTATTCGTT 162536 || | | |||||| ||| | || | ||||| | ||| |||| ||| || | | Sbjct 146925 TTCAAT-TGTATCCTTATAATATTATAATCACATTCTCCGCTCCAATTGTTGTTTTTGGT 146867 Query 162537 AGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGG 162596 ||| || | || ||||| || | || | |||||| || |||| || | Sbjct 146866 TCTGTATTCTTGATTTATCCGTTAGTTCAGT----CTGGTTTTTTACACCCAGTTTTAGC 146811 Query 162597 GTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAAT 162656 || | ||| || || ||||| ||||| |||||||||| ||||| |||| | || Sbjct 146810 GTAGTAGCTATATTACGATTTACCCTCTTTTTCCAAGGGTTTCATAATTGGAAATTTAAC 146751 Query 162657 CCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCAT 162716 || |||||||||||||| || || || | || ||| |||| |||| | |||||| ||| Sbjct 146750 CCATTTCACATGATGGGAGTTGCTGGGGT-ATTAGTGTTGCACTGCTATGTGCTATCCAT 146692 Query 162717 GGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGA 162754 || | | || || ||||| | | |||||||| || Sbjct 146691 GGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGA 146654 >seq1194 Length=46772 Score = 111 bits (122), Expect = 2e-19 Identities = 199/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 162147 GACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 162206 ||||||||||||||||| | ||||| || || | || ||| ||| ||| | || Sbjct 21569 GACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCACT 21510 Query 162207 CTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCG 162266 | || |||||| | | || | || || || || || |||||||| ||| | || Sbjct 21509 TTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGCA 21450 Query 162267 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCT 162326 ||||||||| | || ||||| | ||||| | |||||| ||||| | | | Sbjct 21449 AGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAATAGT 21390 Query 162327 ATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGG 162386 | | || ||| | |||| ||| |||||||||| | ||||| || || | | ||| Sbjct 21389 TTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCATTGG 21330 Query 162387 TGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCA 162437 || ||| | || || || ||||||||||| || |||||||| || |||||| Sbjct 21329 TGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGCA 21279 >seq964 Length=67008 Score = 102 bits (112), Expect = 9e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 162823 ACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCT 162882 ||||||| ||||| || || || || ||| |||| || || |||||||| ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 162883 TTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCG 162942 ||||| | ||| | || || | ||| | | || ||| || | || | | || || | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 162943 CTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTG 163002 || | ||| | ||||| || ||||| || ||||||||| | | | | || ||||| |||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 163003 AGTTTGAGA 163011 | ||||||| Sbjct 23599 AATTTGAGA 23607 >seq269 Length=207462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 162144 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 162203 || ||||||||||||||||| || ||||| || || | || ||||| ||| ||| | Sbjct 67645 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTC 67586 Query 162204 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATA--CTCACGGAC 162261 ||| | || |||||| | | || || || || || ||||||| |||| ||| Sbjct 67585 GCTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGGTATACTCTCATGGAT 67526 Query 162262 TTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGC 162319 | || ||||||||| | | ||| ||| ||||| | |||| |||||||||||||| || Sbjct 67525 TAGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTGCCTGCCGCAGTTTCTACTCCCGC 67468 >seq139 Length=308073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||| ||||||||||||||||||||| || || |||||| ||||| ||||||||| || Sbjct 89682 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGT 89741 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGC 161288 ||||| || |||||||| || || || Sbjct 89742 TGCATATTCAGCTCCTGTTGCAGCTGC 89768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547555522714200