Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 seq716 161 1e-34 seq257 149 8e-31 seq168 111 2e-19 seq964 93.3 5e-14 seq272 89.7 7e-13 >seq1 Length=1764766 Score = 224 bits (248), Expect = 1e-53 Identities = 256/344 (74%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | | | ||||| ||||| |||| |||||||||||| || ||||| Sbjct 982957 AGAGCGTTTCCACGAGATAGAACCTCCTCAGGGAATATAAAGTTTTCATGAGGCTGATCT 983016 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | ||| || || || || || || || |||||| | ||| Sbjct 983017 TGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAGAGAATATTTTTGGTGTAGCAAGTC 983076 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| ||||| || || |||||||| ||||| || Sbjct 983077 TCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGAGAAACGAAGTCATAGGCACGTAGA 983136 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 983137 TTCAAAGCCAGACCGACTACTCCAAAAGCACTCATCCATAAACCAGTTACTGGTACAAAT 983196 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 983197 AACATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 983256 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGT 102053 || ||||| || ||||||||||||||||| ||||| |||| || Sbjct 983257 AAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGCTTGAGT 983300 >seq716 Length=92840 Score = 161 bits (178), Expect = 1e-34 Identities = 203/279 (73%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 103418 GCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCT 103477 || |||||||||||||| || || || ||||||||||||||||| || || || || ||| Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 103478 TCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACC 103537 |||||||| ||||| ||||||| | || ||||||| |||| || || | | | | Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 103538 AGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCA 103597 | || || || | ||||| || ||||||||||| || || || ||||| || ||| Sbjct 34038 AAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACACCA 34097 Query 103598 GCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGC 103657 || || || | ||| | || |||||||| || || | || || ||||| || || | | Sbjct 34098 GCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACAATC 34157 Query 103658 ATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCA 103696 || ||||||| || | || || || | ||||||| || Sbjct 34158 ATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq257 Length=213233 Score = 149 bits (164), Expect = 8e-31 Identities = 248/355 (70%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 101992 CCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGT 102051 ||||||||||| ||||| || | ||| || ||||||||||||||||| | ||| ||| Sbjct 14136 CCAAAGATTTGGGACCAAAAGCAGTTAGCGGTAACCATTGAATAAGTTTATTCAGTTTGA 14195 Query 102052 GTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCC 102111 || | | || | ||| || ||| | |||| |||||||| | | || || || Sbjct 14196 GTTGGGTTAAAAGTAGGGAATGTATTTACACCATCATCATCTTCAAATAAGGTATTTTCT 14255 Query 102112 AC---AGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCT--GCAACAC 102166 | |||| || || || || | |||| || | |||| |||||| ||||| | Sbjct 14256 ATGGTAGTGTCA---TGAATAGCACATAGCATAGCAGCACCCA--ATACCTCGGCAACTC 14310 Query 102167 CCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATC 102226 ||||||| || |||| ||| | ||||| |||| || || || | || || | ||||| Sbjct 14311 CCATCATGTGAAATGAGTTCAATGTCCAATTATAAAACCCTTGGAAAAATAGGATGAATC 14370 Query 102227 TAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGAT 102286 |||||| ||||| |||||||| ||| ||||||||||||| |||| || |||| Sbjct 14371 GAAATATAGCTGCTACACCAAAATTGGGTGCAAAGAACCAACCAAACTGACCTTATGGAT 14430 Query 102287 AGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATT 102341 | || || || ||| ||||||||| | || || | ||||| || || ||||| Sbjct 14431 AAATCAGGAATACAGAAACAAAAACAACAATTGGAGCGGAGAATGCGATTGCATT 14485 >seq168 Length=274740 Score = 111 bits (122), Expect = 2e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 103166 TCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATA 103225 ||| |||| || ||||| || | |||||| ||||| ||||| || ||||| ||||||||| Sbjct 245436 TCTACAGCCGCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 245377 Query 103226 CCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCA 103285 || ||| ||| ||||| | | | || |||| || | |||||||| | || |||| Sbjct 245376 CCAAGATTAGCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCA 245317 Query 103286 AGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGT 103345 | | | || ||||| || || || || | ||| || |||||| |||||| ||| | Sbjct 245316 ACTACAAATTGATTGAAATTAAAACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAA 245257 Query 103346 GCGGTGAACCAGATACCCACTAC 103368 | || ||||| ||||| ||||| Sbjct 245256 G-AGTAAACCAAATACCTACTAC 245235 >seq964 Length=67008 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101828 TCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAA 101887 |||| || || |||||||| |||| ||| ||||| || || |||||||| ||||| | Sbjct 23607 TCTCAAATTCAGGATCTTCCGCTGAATGGATTTCTTGAGAAACGAAGTCATAGGCACGTA 23548 Query 101888 GGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAA 101947 || | ||| ||||| | | || | | ||| || | | ||| | || || | || Sbjct 23547 AATTCAAAGCCAGACCGACTACTCCAAGAGCACTCATCTATAAACCAGTTACTGGTATAA 23488 Query 101948 AGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACC 102007 | | |||||||||||| ||||| | ||||| ||| ||| ||||||||||| |||| Sbjct 23487 ATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAACAACCCCAAAGATTTGGGACC 23428 Query 102008 AGAAACGGT 102016 | || |||| Sbjct 23427 AAAAGCGGT 23419 >seq272 Length=206342 Score = 89.7 bits (98), Expect = 7e-13 Identities = 279/428 (65%), Gaps = 12/428 (3%) Strand=Plus/Plus Query 102084 ATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGC 102143 ||||||||||||| | | ||| || || || | | || ||||| || | |||||||| Sbjct 146653 ATCACCATCTTCAAATAAAGTATTGTCTACGATAGCGCCATGGATAGCACATAGCAGTGC 146712 Query 102144 TCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAA 102203 | | | | || ||||| |||||||| || |||||||| | |||| ||||| || Sbjct 146713 AAC-ACTAATACCCCAGCAACTCCCATCATGTGAAATGGGTTAAATTTCCAATTATGAAA 146771 Query 102204 GCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAA 102263 || || | ||||| |||| ||||| ||| | || | ||| ||| | ||| || Sbjct 146772 CCCTTGGAAAAAGAGGGTAAATCGTAATATAGCTACTACGCTAAAACTGGGTGTAAAAAA 146831 Query 102264 CCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCC 102323 ||| ||||| | | ||||| || | || ||| |||||||| | || || | Sbjct 146832 CCA----GACTGAACTAACGGATAAATCAAGAATACAGAACCAAAAACAACAATTGGAGC 146887 Query 102324 AGAGAACG---CAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTG 102380 ||||| | ||| ||| || ||| | | || | | ||| | || ||||| Sbjct 146888 GGAGAATGTGATTATAATATTATAAGGATACAATTGAACAGATCGAGCAAGTTCAAATTG 146947 Query 102381 ACGAAGCATGAAACCAATGAG--GGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGT 102438 ||| | | ||||| || || | ||||| || || ||| | ||||||| ||| || Sbjct 146948 ACGTAATGTAAAACCTATTAGTTTGAAAATG--CCATGAAGAACAACAAAAGTCCACAGA 147005 Query 102439 CCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGA 102498 || | | ||| ||| | ||||| | ||| ||||||||| |||| |||| | Sbjct 147006 CCACTTATTTGACACCAACGAGTAAAATCGCATTGTGCTTCAGGATCCCATAGTAACATT 147065 Query 102499 AGAGAATG 102506 | |||||| Sbjct 147066 AAAGAATG 147073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633291909834600