Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq716 131 5e-26 seq2 93.3 1e-14 seq168 91.5 4e-14 >seq716 Length=92840 Score = 131 bits (144), Expect = 5e-26 Identities = 198/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 || |||||||||||||| | || |||||||| || ||||| || |||||||| || || Sbjct 33915 CTCGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTT 33974 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | || || | | ||| || || | | Sbjct 33975 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTT 34034 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| || |||||| ||| | || || ||||| Sbjct 34035 ATCAAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACA 34094 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||| |||| || |||||||| |||| ||||||||| || || || Sbjct 34095 CCAGCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACA 34154 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCA 21992 | ||| ||||||| || | || || || | |||||| || Sbjct 34155 ATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq2 Length=1456787 Score = 93.3 bits (102), Expect = 1e-14 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Minus Query 21636 CCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTA 21695 |||| || | |||||||||||| || |||||||| ||||| | ||||| || | | | Sbjct 1455539 CCAAAAGCGGTAAACCAAATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAA 1455480 Query 21696 CGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCA 21755 || | | | |||||||||||||| || | || |||||||| || |||||||| Sbjct 1455479 CGAGGA-------AACTAGCATATTGGAATATCAATCGGCCAAAATAACCATGAGCAGCT 1455427 Query 21756 ACAATATTGTAAGTCTCTTC 21775 |||||||| || || ||||| Sbjct 1455426 ACAATATTATAGGTTTCTTC 1455407 >seq168 Length=274740 Score = 91.5 bits (100), Expect = 4e-14 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || | |||||| || || || || |||||||| || || | ||||| || Sbjct 245427 GCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 245368 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || | | || |||| || || || | || | | | | | | | || Sbjct 245367 GCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTACAAAT 245308 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 || || || || |||||||| ||||| ||||||||| | | || | | || |||| Sbjct 245307 TGATTGAAATTAAAACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAAG-AGTAAAC 245249 Query 21651 CAAATACCTACAACA 21665 ||||||||||| ||| Sbjct 245248 CAAATACCTACTACA 245234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146159394521100