Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq716 152 6e-32 seq1 143 3e-29 seq257 104 3e-17 seq1194 95.1 1e-14 seq269 93.3 5e-14 seq21 93.3 5e-14 >seq716 Length=92840 Score = 152 bits (168), Expect = 6e-32 Identities = 201/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 124292 GCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCT 124351 ||||| |||||||| | || ||||| ||||| || || ||||| || || || |||||| Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 124352 TCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATT 124411 || ||||| ||||| | ||||| | || || || | ||||| |||| || || Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 124412 AGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCT 124471 | | ||| || || | |||||||| || || ||||| || || ||||| | || Sbjct 34038 AAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACACCA 34097 Query 124472 GCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAAC 124531 ||||| ||| ||| | || || ||||| || || | ||||| ||||| || || | | Sbjct 34098 GCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACAATC 34157 Query 124532 ATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCA 124570 |||||||||||||||| ||||| || || ||||||||| Sbjct 34158 ATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq1 Length=1764766 Score = 143 bits (158), Expect = 3e-29 Identities = 235/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | | || || || || ||||||| ||| || ||||| || || Sbjct 982953 TTAAAGAGCGTTTCCACGAGATAGAACCTCCTCAGGGAATATAAAGTTTTCATGAGGCTG 983012 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || || || || | ||||| || || || ||| | Sbjct 983013 ATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAGAGAATATTTTTGGTGTAGCA 983072 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || |||||||| || ||||| || || | Sbjct 983073 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGAGAAACGAAGTCATAGGCACG 983132 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 || || | || ||||| || | || | || |||| | ||| | || || || Sbjct 983133 TAGATTCAAAGCCAGACCGACTACTCCAAAAGCACTCATCCATAAACCAGTTACTGGTAC 983192 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 983193 AAATAACATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 983252 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTC 123204 ||| || | ||| || |||| ||| |||||||||||| Sbjct 983253 CCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTC 983291 >seq257 Length=213233 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 123303 CATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGAAATG 123362 ||||||| |||||||| | || |||| | || | ||||| |||||||||||||||| Sbjct 14266 CATGAATAGCACATAGCATAGCAGCACCCAATACCTCGGCAACTCCCATCATGTGAAATG 14325 Query 123363 GATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCTGCGA 123422 |||||||| || | || ||||| | |||| ||| | ||||| || ||||| | Sbjct 14326 AGTTCAATGTCCAATTATAAAACCCTTGGAAAAATAGGATGAATCGAAATATAGCTGCTA 14385 Query 123423 CACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCAGAAA 123477 |||| || ||||| |||||||||| ||||||| |||||| ||||| || Sbjct 14386 CACCAAAATTGGGTGCAAAGAACCAACCAAACTGACCTTATGGATAAATCAGGAA 14440 >seq1194 Length=46772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 211/317 (67%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 |||| | || || | ||| ||||| |||| ||||| || | ||| ||||| || | Sbjct 21281 CAAAAGCACCGTGGAGTGCAACAAAAGTCCACAGACCACCTAATTGACACCAATGAGTAA 21340 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | |||||||||||||| |||| || | || | | || | | | | | | Sbjct 21341 AATCGCCTTGTGCTTCAGGACCCCCTAGTAGCAACAAAGAGTGTGCAAAACTATTAACGG 21400 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | || || ||| | || ||||||||||| | || | ||| ||| ||| | |||| Sbjct 21401 GAGTCGAAACTACGGCAGTTAAGAAGTTGTATTATTCCAAATAGGAACTTGCTAATCCAT 21460 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | ||||| ||||| || || ||||| | |||| ||||||||| || | | | ||| | Sbjct 21461 GAGTATAGCATGAAGTTACAAAGGTTATACCTATGAACCAACCTCCTAAAGTGAAATAGG 21520 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||| | || || ||||| ||||| ||| || || ||||| || || ||| | Sbjct 21521 CACAAAAAAATAGCAATAGACCGGACCAATCTACAAAAACGAAACGGTCCTTCCGTAATC 21580 Query 123885 AGTCGTCAAGAACATCA 123901 |||| || | || |||| Sbjct 21581 AGTCATCCATAATATCA 21597 >seq269 Length=207462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763 || || || ||||| || | |||||||| ||| || | ||| ||| ||| | ||| Sbjct 67471 GGAGTAGAAACTGCGGCAGGCAAGAAGTTGCATCCTTCCAAATAGGAACTTGCTAATCCA 67530 Query 123764 TGTG--TATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGAT 123821 || | |||||||||| || || ||| || ||| ||||||||| || | | | || Sbjct 67531 TGAGAGTATACCATGAAGTTACAAAGACTGTACCTGCGAACCAACCTCCTAAAGCGAAAT 67590 Query 123822 ACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTA 123881 | |||||||| | || || ||||| ||||| |||| || || ||||| || ||| || Sbjct 67591 AGGCACAAGGAAAGAGCAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCATA 67650 Query 123882 ACCAGTCGTCAAGAACATCA 123901 |||| || || | || |||| Sbjct 67651 ACCAATCATCCATAATATCA 67670 >seq21 Length=682974 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| || || ||||||||||| || || || Sbjct 403112 TGAGCAGTGCAAATGTTGCTGGTGGCCTTGTCCCTCCTGATATGCTGCTCCCTGGTCTGC 403171 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | | ||||| || || || | || |||| || ||| | ||||| Sbjct 403172 ATAGCCATACGCAACGCAGGCTTCCC--CGACGAATCGACACTAAC--ACCAATGATTCT 403227 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 || || ||| | ||||| |||| | | || || ||||| || |||||||||||||| Sbjct 403228 CCCGGGCATCATCCTCTTGTACTCTTGCGAAGTGGCCAAGAACGCGGCATGAGGACCTCC 403287 Query 139493 GTATCCCATAGGAATACCAAACCTTTG 139519 |||||||| || | |||||| || || Sbjct 403288 ATATCCCATCGGGACACCAAATCTCTG 403314 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||||| || |||||||||||||| |||||||| || || Sbjct 400489 ACACCAATAGGACCCATTCCAGGACCACCTCCTCCATGTGGAATGCAGAATGTTTTGTGG 400548 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | ||| ||||| || || || || ||| Sbjct 400549 AGATTGAGATGGCAAACGTCAGCTCCA 400575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578795786747400