Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1 178 2e-39 seq716 170 3e-37 seq257 141 1e-28 seq272 136 5e-27 seq964 93.3 6e-14 seq2 91.5 2e-13 >seq1 Length=1764766 Score = 178 bits (196), Expect = 2e-39 Identities = 223/306 (73%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAA 23488 ||||||||| || || || || || | |||||| |||| | || | ||| || | Sbjct 982995 AAAGTTTTCATGAGGCTGATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAGAG 983054 Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACT 23548 ||||||||| |||||| | |||||| | | |||||| || ||||| || |||||| Sbjct 983055 AATATTTTTGGTGTAGCAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGAGA 983114 Query 23549 CACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCA 23608 || || ||||| ||||| ||||| | ||| || || | | |||| || | | ||| Sbjct 983115 AACGAAGTCATAGGCACGTAGATTCAAAGCCAGACCGACTACTCCAAAAGCACTCATCCA 983174 Query 23609 AAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGC 23668 | ||| | || || ||||| ||||||||||| || ||||||| |||||| ||| || Sbjct 983175 TAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACATTTATTGGAAAAAGC 983234 Query 23669 AACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTC 23728 |||||| |||||||| |||||||| || || || |||||||| ||||| || || || | Sbjct 983235 AACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGC 983294 Query 23729 CTGAGT 23734 ||||| Sbjct 983295 TTGAGT 983300 >seq716 Length=92840 Score = 170 bits (188), Expect = 3e-37 Identities = 205/279 (73%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 26977 GCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCT 27036 ||||||||||||||||| || || || || ||||| || || || || || ||||| ||| Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 27037 TCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACG 27096 || ||||||||||| | ||||| | || || ||| |||| || || | | | Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 27097 AGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCA 27156 | ||| || |||| || || |||||| ||| || || || |||||||| ||| Sbjct 34038 AAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACACCA 34097 Query 27157 GCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGC 27216 || ||||| | ||| | || |||||||||||||||| ||| || || || ||||||| | Sbjct 34098 GCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACAATC 34157 Query 27217 ATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCA 27255 || |||| ||||||| |||||| || ||||||||| || Sbjct 34158 ATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq257 Length=213233 Score = 141 bits (156), Expect = 1e-28 Identities = 242/351 (69%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 23672 CCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTG 23731 ||| |||||||| |||||||| | || || |||||||| ||||| || | || || Sbjct 14135 CCCAAAGATTTGGGACCAAAAGCAGTTAGCGGTAACCATTGAATAAGTTTATTCAGTTTG 14194 Query 23732 AGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTC 23791 ||| | | || | || || ||| | || |||||||| | | ||||| || Sbjct 14195 AGTTGGGTTAAAAGTAGGGAATGTATTTACACCATCATCATCTTCAAATAAGGTATTTTC 14254 Query 23792 GACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCAT 23851 | ||| ||||||||||| | || | || | |||| || | ||||||||||| Sbjct 14255 TATGGTAGTGTCATGAATAGCACATAGCATAGCAGCACCCAATACCTCGGCAACTCCCAT 14314 Query 23852 CATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAA 23911 ||| || || | ||| | ||||| |||| ||| || |||| || || | ||| | || Sbjct 14315 CATGTGAAATGAGTTCAATGTCCAATTATAAAACCCTTGGAAAAATAGGATGAATCGAAA 14374 Query 23912 AATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGAT 23971 || || || ||||| ||| | || |||||||||||| |||| || | ||||| || Sbjct 14375 TATAGCTGCTACACCAAAATTGGGTGCAAAGAACCAACCAAACTGACCTTATGGATAAAT 14434 Query 23972 GAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATT 24022 ||||||||||| || || ||| |||| ||| | || || || || ||||| Sbjct 14435 CAGGAATACAGAAACAAAAACAACAATTGGAGCGGAGAATGCGATTGCATT 14485 >seq272 Length=206342 Score = 136 bits (150), Expect = 5e-27 Identities = 293/432 (68%), Gaps = 22/432 (5%) Strand=Plus/Plus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || ||||||||| | | ||||| || || || | ||||| |||||| | || ||||| Sbjct 146654 TCACCATCTTCAAATAAAGTATTGTCTACGATAGCGCCATGGATAGCACATAGCAGTGCA 146713 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | | | || ||||||||||||||||| || || ||||| | |||| |||||||| Sbjct 146714 ACACTAA-TACCCCAGCAACTCCCATCATGTGAAATGGGTTAAATTTCCAATTATGAAAC 146772 Query 23886 CCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAAC 23945 || |||| ||||| || | || || || | || | ||||| || | ||| ||| Sbjct 146773 CCTTGGAAAAAGAGGGTAAATCGTAATATAGCTACTACGCTAAAACTGGGTGTAAAAAAC 146832 Query 23946 CAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCA 24005 || ||||| | || ||||| || | ||||||||| | || ||| |||| ||| | Sbjct 146833 CA----GACTGAACTAACGGATAAATCAAGAATACAGAACCAAAAACAACAATTGGAGCG 146888 Query 24006 GAAAAAG---CAATCGCATTGTAGGGACGGATTCCAATT----AGA-CGTGCCAGTTCAA 24057 || || | || ||| || ||| | ||||| ||| || || ||||||| Sbjct 146889 GAGAATGTGATTATAATATTATAAGGA-----TACAATTGAACAGATCGAGCAAGTTCAA 146943 Query 24058 ACTGACGTAACATAAAACCTATAAG--TGCAAAGGCACCGTGGAGAGCAACAAAGGACCA 24115 | |||||||| |||||||||| || || ||| | || || ||| ||||||| | ||| Sbjct 146944 ATTGACGTAATGTAAAACCTATTAGTTTGAAAATG--CCATGAAGAACAACAAAAGTCCA 147001 Query 24116 AAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAG 24175 || || | | ||| ||| || ||| || | ||| | |||||| |||| |||| Sbjct 147002 CAGACCACTTATTTGACACCAACGAGTAAAATCGCATTGTGCTTCAGGATCCCATAGTAA 147061 Query 24176 AAGAAGAGAATG 24187 | | |||||| Sbjct 147062 CATTAAAGAATG 147073 >seq964 Length=67008 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 23522 ATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGCAAG 23581 |||||| || | | | || |||||| || || ||||| ||||| | ||| | ||| || Sbjct 23594 ATCTTCCGCTGAATGGATTTCTTGAGAAACGAAGTCATAGGCACGTAAATTCAAAGCCAG 23535 Query 23582 CCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAAGAA 23641 || | | |||| || | | | | | ||| | || || | ||| ||||||||||| Sbjct 23534 ACCGACTACTCCAAGAGCACTCATCTATAAACCAGTTACTGGTATAAATAACATAAAGAA 23475 Query 23642 GTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACG 23695 || |||||||| |||||| ||| ||||||| |||||||| |||||||| || Sbjct 23474 ATGTAACCAACGTTTATTGGAAAAAACAACCCCAAAGATTTGGGACCAAAAGCG 23421 >seq2 Length=1456787 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/142 (74%), Gaps = 7/142 (5%) Strand=Plus/Minus Query 26898 ACCAAGTGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGA 26957 ||||| ||||| ||||| || || || || ||||| ||||| | ||||||||| || || Sbjct 1455540 ACCAAAAGCGGTAAACCAAATACCCACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGA 1455481 Query 26958 ACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGC 27017 ||| | ||| |||||||||||| ||||| || || || || ||||| || || Sbjct 1455480 ACGAG-------GAAACTAGCATATTGGAATATCAATCGGCCAAAATAACCATGAGCAGC 1455428 Query 27018 GACGATGTTGTAGGTCTCTTCT 27039 || || || ||||| |||||| Sbjct 1455427 TACAATATTATAGGTTTCTTCT 1455406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665261518553400