Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq716 197 2e-45 seq168 102 1e-16 >seq716 Length=92840 Score = 197 bits (218), Expect = 2e-45 Identities = 211/279 (76%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193 ||||| |||||||| |||| ||||| || |||||||| || |||||||||||||| ||| Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 8194 TCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATT 8253 || |||||||| || | ||||| | || ||| || | ||| || || | || || Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 8254 AGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCT 8313 | | ||| || || || ||||| || ||||||||||| || || || ||||| | ||| Sbjct 34038 AAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACACCA 34097 Query 8314 GCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAAC 8373 ||||| ||| |||| | || || |||||||| || | ||||| ||||| ||||| | | Sbjct 34098 GCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACAATC 34157 Query 8374 ATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCA 8412 || ||||| || |||| ||| || ||||||||||| ||| Sbjct 34158 ATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq168 Length=274740 Score = 102 bits (112), Expect = 1e-16 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| | |||||| || ||||| | ||||||||||||||||||||| | || Sbjct 245427 GCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 245368 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAAC-ATCAACAACTGA 8009 || | ||| | | | | || | ||| ||| | ||| ||||| |||||| || | Sbjct 245367 GCACGGTTAATGATATTAACCTAGGTATTAATTACACGACC-TTAACTATCAACTACAAA 245309 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 ||| || || ||||| || || | |||||| ||||| ||| |||||| | || ||| || Sbjct 245308 TTGATTGAAATTAAAACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAAG-AGTAAA 245250 Query 8070 CCAAACACATACAAC 8084 ||||| || ||| || Sbjct 245249 CCAAATACCTACTAC 245235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615646886651400