Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 seq716 167 3e-36 seq257 147 2e-30 seq272 116 4e-21 seq168 104 3e-17 seq2 98.7 1e-15 seq964 93.3 5e-14 >seq1 Length=1764766 Score = 223 bits (246), Expect = 4e-53 Identities = 258/348 (74%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742 ||||| | ||||| ||||||||||||||||| || ||||| || ||||| || ||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATG 167802 || ||||||| ||| ||| | ||| | ||||||||||||||||| || || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 167803 GGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGAT 167862 || | |||| | |||| | | ||||||||| | ||||| ||||| || || Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 167863 TTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAA 167922 |||||||||||||| ||| | || ||||| ||||| || ||||| |||| ||| || ||| Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 167923 AACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGAG 167982 || || || | || || ||| |||| || ||| | || || ||||| |||||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 167983 AACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 |||||| | ||||| ||||| ||||| | || || ||||| || ||| Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAA 982953 >seq716 Length=92840 Score = 167 bits (184), Expect = 3e-36 Identities = 202/275 (73%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 166234 ATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAAT 166293 ||||| || |||||||| | || ||||||| ||| | || || |||||||||||| || Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 166294 ATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTT 166353 || || ||||| || || | |||| | || || ||||| ||||| || ||| | || Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 166354 AGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAA 166413 |||||||| || || ||||| || ||| | | | || | || || |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 166414 TCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCT 166473 || || | ||||||| ||||| ||||| |||||||| || || || ||||||||| Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 166474 CATGGTTACTTCGGTCGTTTGATCTTCCAATACGC 166508 |||||||| || || || |||||||||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 147 bits (162), Expect = 2e-30 Identities = 245/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 167395 AATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCC 167454 ||||| || || ||||| | ||| |||| ||| || ||| || ||||| | ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 167455 CTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTC 167514 ||||| | ||||||||||| || || || || || || || || |||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 167515 CTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTA 167574 |||| || ||||||| || | || |||||| |||| ||||||| |||||||| || Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 167575 GC--AGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATA 167632 || |||||| |||||| ||| |||| | ||| || |||| ||| |||| |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 167633 CTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAG 167692 | || | |||||||| ||| | ||| || || | || | | ||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 167693 AAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGG 167744 || | ||||||||||||||||| || ||| | || ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 116 bits (128), Expect = 4e-21 Identities = 288/429 (67%), Gaps = 16/429 (4%) Strand=Plus/Minus Query 167230 CATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAA 167289 ||||||||| | | ||||||| ||||||| | ||| | ||||| | ||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 167290 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCT--CTCATTGGTTTCA 167347 | | || || ||| ||||||| | || || || | ||| | || || ||||| | Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGG--CATTTTCAAACTAATAGGTTTTA 146956 Query 167348 TGCTTCGACAGTTTGAACTTGCTCGC-CTGAT---TGGTATCCGTCCCTACAATGCTATT 167403 | || || |||||||||||||| ||| | | |||||| | || || || | Sbjct 146955 CATTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTATCCTTA--TAATATTATAAT 146898 Query 167404 G-CTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCA 167462 | ||||| | ||| |||| ||| || | | || ||| | | ||||| | | ||| Sbjct 146897 CACATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCA 146838 Query 167463 AAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTT 167522 |||||| ||| | || || | || | || || || ||||| |||||| Sbjct 146837 GT----CTGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTT 146782 Query 167523 CCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTAT 167582 ||||||| || || || |||| | | || |||||||| |||||||| || || || | Sbjct 146781 TTTCCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT 146722 Query 167583 CCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGA 167642 | | || |||| |||| | ||| |||||||| | || ||||| |||||||| | ||| Sbjct 146721 ATTAG-TGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGA 146663 Query 167643 AGATGGTGA 167651 ||||||||| Sbjct 146662 AGATGGTGA 146654 >seq168 Length=274740 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 166597 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 166656 ||||| || ||| | || ||||| || ||||| || | | ||||| || | |||||| Sbjct 245273 ATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGT 245332 Query 166657 GTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCAT 166716 || | || |||| || || | ||||||| ||| ||| |||||||||||||||||| Sbjct 245333 GTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCAT 245392 Query 166717 GAGCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTG 166756 || ||||| || || |||||| | || ||||| || |||| Sbjct 245393 GAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 >seq2 Length=1456787 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/141 (75%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 166446 AGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATA 166505 ||||||||| || || || ||||| ||||||||||| || || || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 166506 CGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 166565 ||| ||| | || || || ||||||||| | ||||| |||||||| || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 166566 CATCTGGTTCACCGCCCTTGG 166586 || ||||| ||||| |||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGG 1455539 >seq964 Length=67008 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 167720 ACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCT 167779 |||| || ||||| || ||||| || ||| ||| ||| ||||| ||| | ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 167780 TTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGAT--TGGCATCATTGGTCT 167837 |||||||||| | || || | || ||| | || | | | ||| | | ||||| Sbjct 23479 TTATGTTATTTATACCAGTAACTGG--TTTATAGATGAGTGCTCTTGGAGTAGTCGGTCT 23536 Query 167838 GGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCC 167897 |||| | ||| | ||||| || || |||||||||||||| ||| | ||||| ||||| Sbjct 23537 GGCTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCC 23596 Query 167898 AGAGTTTGA 167906 || ||||| Sbjct 23597 TGAATTTGA 23605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561051598278000