Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq716 131 5e-26 seq2 93.3 1e-14 seq168 91.5 4e-14 >seq716 Length=92840 Score = 131 bits (144), Expect = 5e-26 Identities = 198/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 41695 TGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCA 41754 || |||||| | || || || | || ||||||| ||| | || || || |||||||| Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 41755 CAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTT 41814 | |||| |||||||| || |||| ||| | ||||| || || ||||| || || | Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 41815 GTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGA 41874 ||| |||||| || ||| | |||| || || | || | | || || ||| | Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 41875 GGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGC 41934 | || || | ||||||| || |||||||||||||| || || |||||||| || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 41935 TGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAG 41976 ||||| || |||||||| || | |||||||||||||| || Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCGAG 33915 >seq2 Length=1456787 Score = 93.3 bits (102), Expect = 1e-14 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 41912 GAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATAT 41971 ||||| || || |||||||| |||||||| || |||||||| || | || ||||||||| Sbjct 1455407 GAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATAT 1455466 Query 41972 GCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGT 42031 ||||| | | | ||| | | || ||||| | ||||| |||||||| || ||| Sbjct 1455467 GCTAGTT-------TCCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGGT 1455519 Query 42032 ATTTGGTTTGCTGCGCTTGG 42051 ||||||||| | || |||| Sbjct 1455520 ATTTGGTTTACCGCTTTTGG 1455539 >seq168 Length=274740 Score = 91.5 bits (100), Expect = 4e-14 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 42022 TGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGG 42081 ||| ||||||||||||||| || | | || | | ||||||||| ||||| ||||| Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 42082 TTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGA 42141 ||| || || || |||| | | | | | | | || | || || || |||| || | | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 42142 CATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTT 42201 || |||||||||| || ||||| | || || |||||||| || || || || ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 42202 CCCGCTTGACCTTGC 42216 | | || ||||| || Sbjct 245413 CTCTCTAGACCTAGC 245427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146165792393480