Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq716 154 4e-33 seq90 123 7e-24 seq168 95.1 3e-15 seq2 87.8 5e-13 >seq716 Length=92840 Score = 154 bits (170), Expect = 4e-33 Identities = 202/280 (72%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 42750 TGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACA 42809 ||| |||||||| || || || |||| |||||||| ||| | || || || ||||| || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 42810 TAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTT 42869 | || |||||||| || || | |||| | ||||| || || ||||| || || || | Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 42870 GTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAA 42929 ||| ||||| |||||| | || |||||| | | | | |||| || ||||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 42930 CGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGC 42989 ||| ||| | || |||| |||||||||||||| || || ||||| ||||| || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 42990 AGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCG 43029 || |||||||| ||||| || | ||||||||||||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCG 33917 >seq90 Length=380041 Score = 123 bits (136), Expect = 7e-24 Identities = 121/151 (80%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-C 42368 ||| | ||||||||||| |||| ||||||||||| ||||||| |||| | | | | | Sbjct 122819 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCCTATTTTATTGAC 122877 Query 42369 TGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCA 42427 || || | ||| |||||| |||||||||||||| ||||||| ||||| |||||||| | Sbjct 122878 CGCAACTTC-TGTATTTATTATCGCTTTCATTGCTACCCCTCCAGTAGATATTGATGGTA 122936 Query 42428 TTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||| ||||||||| ||||| ||||| || || Sbjct 122937 TTCATGAACCTGTTTCTGGATCTCTACTTTA 122967 >seq168 Length=274740 Score = 95.1 bits (104), Expect = 3e-15 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 43078 GTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGT 43137 || || || |||||||| ||| || | || | || | ||||| |||||||| |||||| Sbjct 245235 GTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGGT 245293 Query 43138 TTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGAT 43197 ||||| || || |||| | ||||||| | | || ||| || ||| | || | || Sbjct 245294 TTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAAT 245353 Query 43198 ATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTC 43257 || | || ||||| || ||||| | || || ||||| || || ||||| ||||||||| Sbjct 245354 ATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 245413 Query 43258 CCGCTTGATCTTGCATCCGTGGAGGTT 43284 | || || || || | || || ||| Sbjct 245414 TCTCTAGACCTAGCGGCTGTAGAAGTT 245440 >seq2 Length=1456787 Score = 87.8 bits (96), Expect = 5e-13 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 42967 GAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATAT 43026 || || || ||||| ||||| || || |||||||| ||||| || | || ||||||||| Sbjct 1455407 GAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATAT 1455466 Query 43027 GCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGG 43086 || | ||| | ||| ||||| |||||||| | || |||||||| || ||||| Sbjct 1455467 GC-TAGTT------TCCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGGT 1455519 Query 43087 ATTTGGTTCACTTCTCTTGG 43106 |||||||| || || |||| Sbjct 1455520 ATTTGGTTTACCGCTTTTGG 1455539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143485083866260