Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq716 145 2e-30 seq168 104 7e-18 >seq716 Length=92840 Score = 145 bits (160), Expect = 2e-30 Identities = 202/283 (71%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||||||||| || || || |||| ||||| || || || || || ||||||||||| || Sbjct 33914 ACTCGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGT 33973 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| || || | || || | ||| || | | ||||| |||| Sbjct 33974 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCT 34033 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || || |||||| ||| || | || ||||| || Sbjct 34034 TATCAAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATAC 34093 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| |||| | ||||||||||| || |||| || || ||||| ||||| Sbjct 34094 ACCAGCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATAC 34153 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCA 26398 | ||||||||| ||||||| |||||| || |||||||| ||| Sbjct 34154 AATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq168 Length=274740 Score = 104 bits (114), Expect = 7e-18 Identities = 145/199 (73%), Gaps = 11/199 (6%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || | ||||||||||||||||| || ||||||||||| | || || ||| Sbjct 245427 GCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 245368 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTC----CATTAAC-ATCTACTA 25991 || ||||| | | || | || ||||||||| || | | ||||| ||| |||| Sbjct 245367 GCACGGTTAATGATATTAACC----TAGGTATTAA-TTACACGACCTTAACTATCAACTA 245313 Query 25992 CTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATG 26051 | | || || || ||||||||||||| |||||| ||||| ||| ||||| | ||| | Sbjct 245312 CAAATTGATTGAAATTAAAACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAAGA-G 245254 Query 26052 TCAGCCATATGCCAACAAC 26070 | | ||| || || || || Sbjct 245253 TAAACCAAATACCTACTAC 245235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147662894530400