Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq716 118 3e-22 seq168 91.5 4e-14 >seq716 Length=92840 Score = 118 bits (130), Expect = 3e-22 Identities = 197/282 (70%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 40776 GCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCG 40835 |||||||| || || | || ||||| ||||| || || ||||| || ||||| || || Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 40836 CCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATG 40895 | || ||||| || | || || | || |||||| |||| ||||| | || || Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 40896 A---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACG 40952 | | |||| || ||||| || || |||||| || | | || || || || Sbjct 34038 AAACTAGAGGT--TACCAAGGAA-CCATGTATAGCACTGAATAGGGAGCCGCCGAATACA 34094 Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACA 41012 || || || || | |||| | ||||||||||| || || | ||| || ||||| || ||| Sbjct 34095 CCAGCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACA 34154 Query 41013 AACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCA 41054 | ||| |||||||| || | | |||||||| |||||||||| Sbjct 34155 ATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCA 34196 >seq168 Length=274740 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 |||| |||||||| ||||| ||||| ||||| || ||||| ||||||||||| ||| | Sbjct 245427 GCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 245368 Query 40593 TGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGAC 40652 | ||||| | || | || | ||| ||| || ||| | | || ||||| | Sbjct 245367 GCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTACAAAT 245308 Query 40653 TGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCAT 40687 || || || ||||||||||| | |||||||||||| Sbjct 245307 TGATTGAAATTAAAACCATTTAAGTTAAAAGCCAT 245273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143654627484330