Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1 260 2e-64 seq716 190 2e-43 seq257 179 4e-40 seq168 114 1e-20 seq272 105 8e-18 seq964 98.7 1e-15 seq90 93.3 5e-14 >seq1 Length=1764766 Score = 260 bits (288), Expect = 2e-64 Identities = 267/349 (77%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| | ||||| || || ||||||| |||||||||||| || | Sbjct 982952 ATTAAAGAGCGTTTCCACGAGATAGAACCTCCTCAGGGAATATAAAGTTTTCATGAGGCT 983011 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| ||| || || || ||||| || || |||||| Sbjct 983012 GATCTTGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAGAGAATATTTTTGGTGTAGC 983071 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| ||||| || || |||||||| |||| Sbjct 983072 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGAGAAACGAAGTCATAGGCAC 983131 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | || || | ||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 983132 GTAGATTCAAAGCCAGACCGACTACTCCAAAAGCACTCATCCATAAACCAGTTACTGGTA 983191 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 983192 CAAATAACATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCCCAAAGATTTGGG 983251 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGT 66934 |||| |||||||| || ||||||||||| ||||||||||| ||||||| Sbjct 983252 ACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGCTTGAGT 983300 >seq716 Length=92840 Score = 190 bits (210), Expect = 2e-43 Identities = 207/275 (75%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 68086 GCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCT 68145 ||||| |||||||||| || || || || ||||| || || ||||| || || || ||| Sbjct 33918 GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTTCT 33977 Query 68146 TCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACC 68205 || ||||||||||| ||||||| | || || ||| |||| ||||||| | | | Sbjct 33978 TCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTTCCTTATC 34037 Query 68206 AGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCA 68265 | ||| || |||| ||||||||| || |||||||| || || || || ||||| ||| Sbjct 34038 AAACTAGAGGTTACCAAGGAACCATGTATAGCACTGAATAGGGAGCCGCCGAATACACCA 34097 Query 68266 GCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325 || || || | |||| | || |||||||| ||||| | |||||| ||||| || || | | Sbjct 34098 GCTACACCTAACATAAGAAATGGGTGCATAAGGATATAGTGCTCAGCTTGAAATACAATC 34157 Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCAT 68360 || |||||||||||| ||| || || |||||||| Sbjct 34158 ATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCAT 34192 >seq257 Length=213233 Score = 179 bits (198), Expect = 4e-40 Identities = 252/352 (72%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 66873 CCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGA 66932 |||||||| || ||||| |||| ||| || ||||||||||| ||||||| ||| |||| Sbjct 14136 CCAAAGATTTGGGACCAAAAGCAGTTAGCGGTAACCATTGAATAAGTTTATTCAGTTTGA 14195 Query 66933 GTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCT 66992 || | || || | ||| || ||| | ||| |||||||| | | ||||| ||| Sbjct 14196 GTTGGGTTAAAAGTAGGGAATGTATTTACACCATCATCATCTTCAAATAAGGTATTTTCT 14255 Query 66993 ACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCT--GCTACACCCA 67050 | ||| ||||||| ||| | |||| ||| |||||| |||||| || || |||| Sbjct 14256 ATGGTAGTGTCATGAATAGCACATAGCATAGCAGCACCCA--ATACCTCGGCAACTCCCA 14313 Query 67051 TCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAA 67110 |||| ||||| | |||||| ||||| |||| || ||||| | || || | |||||||| Sbjct 14314 TCATGTGAAATGAGTTCAATGTCCAATTATAAAACCCTTGGAAAAATAGGATGAATCGAA 14373 Query 67111 AGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGA 67170 | || |||| || || ||| || || || ||||||| | ||||| || || | Sbjct 14374 ATATAGCTGCTACACCAAAATTGGGTGCAAAGAACCAACCAAACTGACCTTATGGATAAA 14433 Query 67171 TGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATT 67222 | || || ||| |||||||||| | || ||| | ||||| || || ||||| Sbjct 14434 TCAGGAATACAGAAACAAAAACAACAATTGGAGCGGAGAATGCGATTGCATT 14485 >seq168 Length=274740 Score = 114 bits (126), Expect = 1e-20 Identities = 146/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 67838 CAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCA 67897 |||| || ||||| |||| |||||| || || ||||| |||||||||||||||||||| | Sbjct 245432 CAGCCGCTAGGTCTAGAGAGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 245373 Query 67898 AACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGA 67957 | ||| ||||| | | | || ||||| | || ||| ||||||||| | Sbjct 245372 GATTAGCACGGTTAATGATATTAACCTAGGTATTAATTACACGACCTTAACTATCAACTA 245313 Query 67958 TAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAG 68017 | | || ||||| || |||||||| | ||| || |||||| |||||| ||| | | || Sbjct 245312 CAAATTGATTGAAATTAAAACCATTTAAGTTAAAAGCCATGATGCTAATACCTAAAG-AG 245254 Query 68018 TGAACCAGATACCAACGACA 68037 | ||||| ||||| || ||| Sbjct 245253 TAAACCAAATACCTACTACA 245234 >seq272 Length=206342 Score = 105 bits (116), Expect = 8e-18 Identities = 282/426 (66%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 |||||||||||| | | |||||| ||||| || | ||||| || ||| | |||| |||| Sbjct 146654 TCACCATCTTCAAATAAAGTATTGTCTACGATAGCGCCATGGATAGCACATAGCAGTGCA 146713 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085 || | | | || || || |||||||| ||||| ||||| || |||| ||||| || Sbjct 146714 ACA-CTAATACCCCAGCAACTCCCATCATGTGAAATGGGTTAAATTTCCAATTATGAAAC 146772 Query 67086 CCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAAC 67145 ||||| | ||||| ||||| || || ||| || | ||| || | |||||| Sbjct 146773 CCTTGGAAAAAGAGGGTAAATCGTAATATAGCTACTACGCTAAAACTGGGTGTAAAAAAC 146832 Query 67146 CAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCA 67205 || || ||| | | || || || | || ||| | |||||||| | || ||| | Sbjct 146833 CA----GACTGAACTAACGGATAAATCAAGAATACAGAACCAAAAACAACAATTGGAGCG 146888 Query 67206 GAGAACG---CAATAGCATTGTAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAACTG 67261 ||||| | ||| ||| || ||| | | || ||| || || |||||||| || Sbjct 146889 GAGAATGTGATTATAATATTATAAGGATACA-ATTGAACAGATCGAGCAAGTTCAAATTG 146947 Query 67262 GCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCC 67321 || | | ||||| ||||| |||| || || || | |||||| |||| || || Sbjct 146948 ACGTAATGTAAAACCTATTAGTTTGAAAATGCCATGAAGAACAACAAAAGTCCACAGACC 147007 Query 67322 TCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAG 67381 | | ||| ||| || ||||| | || | |||||| |||| |||| | | Sbjct 147008 ACTTATTTGACACCAACGAGTAAAATCGCATTGTGCTTCAGGATCCCATAGTAACATTAA 147067 Query 67382 AGAATG 67387 |||||| Sbjct 147068 AGAATG 147073 >seq964 Length=67008 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 66709 TCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAA 66768 |||| || || || ||||| |||| ||| ||||| || || |||||||| ||||| | Sbjct 23607 TCTCAAATTCAGGATCTTCCGCTGAATGGATTTCTTGAGAAACGAAGTCATAGGCACGTA 23548 Query 66769 GGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAACAA 66828 || | ||| ||||| | | || | | ||| || | | ||| | || || | || Sbjct 23547 AATTCAAAGCCAGACCGACTACTCCAAGAGCACTCATCTATAAACCAGTTACTGGTATAA 23488 Query 66829 ACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGACC 66888 | |||||||||||||| ||||| | |||||| ||| ||| |||||||| || |||| Sbjct 23487 ATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAACAACCCCAAAGATTTGGGACC 23428 Query 66889 AGAAGCGGT 66897 | ||||||| Sbjct 23427 AAAAGCGGT 23419 >seq90 Length=380041 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 68656 TACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCG 68715 || || || || |||| |||||||||| |||||||||| || || || || || | ||| Sbjct 122967 TAAAGTAGAGATCCAGAAACAGGTTCATGAATACCATCAATATCTACTGGAGGGGTAGCA 122908 Query 68716 ATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCC 68774 ||||| |||| || || ||||| | |||| | | | |||||||||||| || || Sbjct 122907 ATGAAAGCGATAATAAATACAGAAG-TTGCGGTCAATAAAATAGGGATCATCAAAACACC 122849 Query 68775 GAACCAACCAACGTAAAGGCGGTTCTCTGT 68804 ||||| |||| |||||| ||||| || || Sbjct 122848 AAACCATCCAATGTAAAGACGGTTTTCAGT 122819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571854216713400