Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1347 114 4e-20 seq114 113 1e-19 seq8 107 6e-18 seq17 95.1 4e-14 seq208 93.3 1e-13 >seq1347 Length=37354 Score = 114 bits (126), Expect = 4e-20 Identities = 340/512 (66%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 |||||||||||| |||| | || || | ||| | || || |||||||| || || Sbjct 26480 CCTATCAAACCTTCCAGGCCTCAACAAGGCGGAGTCGAGAATGTCTGCTCTGTTAGTCGC 26539 Query 288909 TGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCCATCCATACTTGTTAAAATTT 288964 || |||| ||||| ||| | ||| ||| ||| || ||||| |||||||| | Sbjct 26540 AGC-AATA--ACAAT-GATACCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAAAGCT 26595 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttt 289024 | ||||| || ||||| |||||||| ||| ||| | ||| ||| | | | ||| | Sbjct 26596 GGTTAAGGGTCTGTTCTCTTTCATCGTTTCCACCACC--AAT-ACCGGTACCTCTCTGTC 26652 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 | ||||||||||||||||| |||| || | | || || | ||| | | || Sbjct 26653 GT---CCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTAGCCT 26709 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 || || | || | || || || || |||| |||||| ||||||| ||||| |||| Sbjct 26710 TTTTGAAAAGATCACGCACTCGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCAG 26769 Query 289145 AAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || | || | | || | |||| ||| ||||| || || | |||| | || || || Sbjct 26770 AACCTGAGA-TAGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAGCAGG 26828 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA--- 289260 ||||| || || ||||| || || | | ||||||||||| || | |||||| Sbjct 26829 GTCTTTCCAGTCCCAGGAGGACCAACAAGAAGAACTCCCTTAGGAATACGAGCCCCAATT 26888 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 |||| | | |||| || |||| ||||| || || | ||| || || | ||| Sbjct 26889 GCAG---TGAACCTCTCGGGTTTCTTCAAAAACTCCACCACCTCCATAAAGTCCTGCTTT 26945 Query 289321 GCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || ||||| ||| || || ||| | || || Sbjct 26946 GCTTCATCGACTCCAGCAACGTCATCGAACGT 26977 >seq114 Length=338572 Score = 113 bits (124), Expect = 1e-19 Identities = 231/341 (68%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||||||| |||||| | |||||| || |||||| || | | | || Sbjct 177498 ATTTCTTACGGTCCCATCATATTTGACCATAATATCCTCCATAGCTTTCACCAGTCTCCG 177557 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| || || || || ||| ||||| || || ||||| || ||||| | | |||||| Sbjct 177558 CTGGATGTACCCGGTCTCAGAAGTTTTCACTGCAGTATCTATAAGACCTTCTCTACCACC 177617 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| |||||||| | ||| | ||| || || | | | | ||| ||||||| || Sbjct 177618 CATAGCGTGGAAGAAGAACTCCTGCGGAGTCAGTCCTCGCAGATACGAGTTCTCAACAAA 177677 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CAT 302776 ||||| || ||| || ||| | ||| ||||| |||| || | | || | Sbjct 177678 GCCACGACTTTCTGGCCCATAATCGTCTTGGGTGAAGTGGGGCAATGTTC-GACCTATAA 177736 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || || || || ||||| || ||||| || ||||| |||| || | | |||| || | Sbjct 177737 ACCCATAGGGAATTCGCTTACCCTCAACATTTTGCTGCCCCACACAAGCAGTCATTTGTG 177796 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || | ||| || || || || ||| | |||||| Sbjct 177797 AGATGTTAATGAAACTTCCTTTAGATCCTGCAGTAACCATA 177837 >seq8 Length=1027367 Score = 107 bits (118), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| |||||||| || ||| ||||| ||||| |||||||| | |||||| || | || Sbjct 605773 TACCTTTCCTCTTCCCTCCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACCCGTA 605832 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||| ||||| || || ||||||||||| ||||||| || | || | Sbjct 605833 GCATTGGAACAATGCCATTAGACGTCCCATTGGTTCCCCGAATATAACTCCCTGTCGAAC 605892 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||| |||| | ||||| || || | |||| ||| ||| || |||| Sbjct 605893 GAATATTGTGAACCGAGACACCAATTCCTCCGGCTGATTTGCTAATAACAGCACACTCCT 605952 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | || | | | || |||||||| |||||||| ||| Sbjct 605953 TCAAGGTGTCGTATATCCCTTCAATGCTATCATCTTTCAT 605992 >seq17 Length=748135 Score = 95.1 bits (104), Expect = 4e-14 Identities = 220/327 (67%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| | |||||| |||||||| || ||||| || | | || |||| | || || Sbjct 175628 CCTTGCTCTACCAATTGCATCAATCTCATCAATAAATACTATACTTGGAGCACACTGCCT 175569 Query 289080 CGCAATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 || || | |||||| | || || | ||||| ||||| ||||||| |||| || | Sbjct 175568 TGC--TTCCTGAAATAAGTTCCTAACCCTGGATGGTCCAACACCAACAAACATCTCCATG 175511 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTT-ACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 || || ||| | || | | || ||| | ||| | ||| ||||| ||| | || Sbjct 175510 AAATCCGAACCAGAAA-TGGACAGAAAGGGCACACCAGATTCTCCTGCAGTTGCTTTTGC 175452 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 ||||| ||||| |||||||| || || || | || ||| |||| || || | |||||| Sbjct 175451 TAGAAGGGTCTTTCCTGTTCCCGGCGGACCTACCAACAGAGCTCCTTTAGGAATTTTTGC 175392 Query 289257 CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 || || ||| |||| ||| |||| | || | |||| ||| | || | Sbjct 175391 TCCCAATTCCTCATACTTCTTTGGGTTCTTGAGGAAGTGCACAAACTCCATGATCTCTTG 175332 Query 289317 TTTTGCCTCATCACATCCTGCTACATC 289343 |||||||||||||| || |||||||| Sbjct 175331 CTTTGCCTCATCACAGCCAGCTACATC 175305 >seq208 Length=244827 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 251476 AAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCA 251535 ||| ||| |||||||| | ||||||||||||||| |||||||| || || |||||||| Sbjct 187792 AAGTGAGCAGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCAAAGCGAAGACCT 187733 Query 251536 CCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 ||||| |||| || ||||| |||||||| Sbjct 187732 CCATCACGAGACCGTCCCTCTGCAGGCTG 187704 Score = 84.2 bits (92), Expect = 6e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||||||||||||||||||||||||||||||||| |||| || ||||| |||||| Sbjct 187784 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCAAAGCGAAGACCTCCATCACG 187725 Query 233332 TGACCTACCCT 233342 |||| |||| Sbjct 187724 AGACCGTCCCT 187714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471289679724315