Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 seq716 174 2e-38 seq257 140 4e-28 seq272 123 3e-23 seq168 104 3e-17 >seq1 Length=1764766 Score = 223 bits (246), Expect = 4e-53 Identities = 260/351 (74%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 159961 CAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 160020 ||||||||| || || ||||| || ||||| || || |||||||| ||||| || |||| Sbjct 983302 CAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCT 983243 Query 160021 TCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTA 160080 | || |||| ||||| || || | ||| | |||||||| ||||| ||||| || || | Sbjct 983242 TTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 983183 Query 160081 TGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACG 160140 ||| | |||| || |||| | | || || ||| | ||||| ||||| || | Sbjct 983182 CTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATG 983123 Query 160141 ATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCA 160200 | ||||| |||||| ||| | ||||| |||||||| ||||||||||| | |||||||| Sbjct 983122 ACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCA 983063 Query 160201 AAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATG 160260 |||| || || || ||||| || | ||||| ||| |||| || ||||| || |||| Sbjct 983062 AAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 983003 Query 160261 AAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||||||||| ||||| || || || | || | || ||||| ||||||| Sbjct 983002 AAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAAT 982952 >seq716 Length=92840 Score = 174 bits (192), Expect = 2e-38 Identities = 206/279 (74%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 158041 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158100 || ||||||||| || |||||| ||||||| |||| ||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 158101 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158160 | | |||||||||||||| || | |||| | ||||| ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 158161 TTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAAC 158220 ||| |||||| || || | || || || | | | |||| || |||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 158221 AGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGC 158280 || || || | ||||||| ||||||||||||||||| |||||||| || || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 158281 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 158319 || ||||| || || || || |||||||||||||| || Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 140 bits (154), Expect = 4e-28 Identities = 241/350 (69%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 159675 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCA 159734 ||||| || || ||||| | ||| |||| ||||||||| || ||||| || || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 159735 TTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTC 159794 | ||||||| ||||||| || || || ||||| || ||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 159795 CTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTT 159854 | | || | ||||| ||| | || ||||| || || | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 159855 GCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACA 159914 || | || | |||| || | || |||| || |||| | ||| |||| || || Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 159915 CTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAG 159974 | | |||||||| || | |||||| || | ||| | |||||||| || Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 159975 GAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 | ||||| || ||||| || || ||| |||| ||||| || ||||| || Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 123 bits (136), Expect = 3e-23 Identities = 291/432 (67%), Gaps = 22/432 (5%) Strand=Plus/Minus Query 159510 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 159569 |||||| | | |||| |||| |||||| | || | |||| || ||||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 159570 CTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATG 159629 | | || | |||| |||||| | || || || ||| ||||| ||||| | Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 159630 CTCCGTCAGTTTGAACTGGCACG-TCT---CATTGGTATCCGTCCTTACAATGCTATTG- 159684 | ||||| |||||||| || || ||| || | |||||| ||| ||| ||| Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTATCC----TTATAATATTATAAT 146898 Query 159685 --CGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCA 159742 | ||||| | ||| |||| |||||||| || ||| | || || || || | ||| Sbjct 146897 CACATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCA 146838 Query 159743 GTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT---CCTGTT 159799 ||| ||| |||| | | | || ||| | || | ||| || || |||| ||| || Sbjct 146837 GTCTGGTT--TTTTACACCCAGT--TTTAGCGTAGTAGCTATATTACGATTTACCCTCTT 146782 Query 159800 GTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGG 159859 |||| |||| ||||| || |||| || || || || || ||||||||||||||||| Sbjct 146781 TTTCC---AAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGG 146725 Query 159860 TATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTA 159919 || || ||| ||||| || |||| |||||||||| || ||||| || || | | Sbjct 146724 GGTATTA-GTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATT 146666 Query 159920 TGAAGATGGAGA 159931 ||||||||| || Sbjct 146665 TGAAGATGGTGA 146654 >seq168 Length=274740 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 158408 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 158467 ||||| || ||| | || ||||| || ||||| || | | ||||| || | |||||| Sbjct 245273 ATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGT 245332 Query 158468 GTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCAT 158527 || | || |||| || || | | ||||| ||| |||||||||||||||||||||| Sbjct 245333 GTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCAT 245392 Query 158528 GAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 158567 || ||||| || || |||||| | || ||||| || |||| Sbjct 245393 GAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548182503233400