Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1194 98.7 1e-15 seq269 93.3 5e-14 seq2 89.7 6e-13 >seq1194 Length=46772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 206/307 (67%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| || ||| || || |||||||| || | | ||||| ||||| || || || Sbjct 21587 GATGACTGATTACGGAAGGACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTT 21528 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 |||||| || | | | |||||||||||| |||| | || || || || ||||| Sbjct 21527 TTTTGTGCCTATTTCACTTTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGC 21468 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | ||| || ||| | || | || || |||||||| | ||| Sbjct 21467 TATACTCATGGATTAGCAAGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTT 21408 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 || || || | | || | | | || | | ||| | || |||| || || |||||| Sbjct 21407 TCGACTCCCGTTAATAGTTTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAA 21348 Query 73616 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 73675 || ||| || | |||| |||||||||||| || |||| ||||| ||| | || || Sbjct 21347 GGCGATTTTACTCATTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGT 21288 Query 73676 GTCTTTG 73682 | |||| Sbjct 21287 GCTTTTG 21281 >seq269 Length=207462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 |||||||||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 67660 GATGATTGGTTATGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 67601 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 |||||||| || | || | ||||||||||||| ||| || || || || |||||| Sbjct 67600 CCTTGTGCCTATTTCGCTTTAGGAGGTTGGTTCGCAGGTACAGTCTTTGTAACTTCATGG 67541 Query 73496 --TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAG 73553 ||| | ||||| | ||| || ||| | || ||| || || || |||| |||| Sbjct 67540 TATACTCTCATGGATTAGCAAGTTCCTATTTGGAAGGATGCAACTTCTTGCCTGCCGCAG 67481 Query 73554 TATCAACACC 73563 | || || || Sbjct 67480 TTTCTACTCC 67471 >seq2 Length=1456787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/133 (74%), Gaps = 7/133 (5%) Strand=Plus/Plus Query 72912 AGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTA 72971 ||||||||| ||||| ||||| ||||||||||| || || || |||| || ||||| || Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 72972 TGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTG 73031 ||| ||| ||||||| |||||||||||| | |||| | |||||||| | Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 73032 TGTATGGTTAACC 73044 | | ||||| ||| Sbjct 1455519 TATTTGGTTTACC 1455531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572673130044600