Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq143 244 1e-58 >seq143 Length=298601 Score = 244 bits (270), Expect = 1e-58 Identities = 230/293 (78%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | | |||| || || ||| Sbjct 57910 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGCGACCTGG 57851 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| || ||||| |||||||||||| ||||||||| Sbjct 57850 ACCTCCTTCATGAACCCACCGGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCGAAG 57791 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| ||||| ||||||| | |||| | | | ||| | Sbjct 57790 AAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAGGGCTTCGAACTGGCGG 57731 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | |||||| ||||||||||||||||| | ||||||||||||||| |||||| Sbjct 57730 ATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGGCCTCGGCCTTCTTGTAC 57671 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||||||| | | | |||| |||| ||||| | | || |||| |||||| Sbjct 57670 ATCTCCCAGATCTCCGGGTACTGGATCGGGAACATGCAGAACCGGTCGGGGTT 57618 Score = 174 bits (192), Expect = 2e-37 Identities = 205/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||| || ||||| |||||| |||| ||| || ||||| | ||| Sbjct 58195 TGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCGGCATCAACCCG 58136 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| |||||||||||||| || || ||||| ||||| || |||||| | Sbjct 58135 CGCTTCTTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAG 58076 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 || ||| ||||||| |||||||| |||| ||| ||| || |||||| | Sbjct 58075 GCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAGCC------GTCGATCCAGCGGAGG 58022 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| | |||||| ||| || | || || |||||||||||||| |||||| || | Sbjct 58021 GCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCGGAAGAGGCGGCTC 57962 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || ||||| | ||||||| ||||| |||| ||||| Sbjct 57961 TTCTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGGAG 57924 Score = 132 bits (146), Expect = 6e-25 Identities = 217/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||| || || | | |||||| ||||||||||| |||| | ||| |||| |||||| Sbjct 58496 GTACTCACCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGATATCAGCTCCAT 58437 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 ||| |||||||| || ||| ||| |||| || |||| | || || || Sbjct 58436 CCAATCAAACGGGTTCTGCACTCCGTACACCTTCCCGCACCCTAGCGCACCCAGAAGCCG 58377 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||||||||| ||||||||||||| ||| || | |||||| || | | ||| Sbjct 58376 ATCGGCGACAAATTCGATGTACTGGCTCATCAGTTCCCGGTTCATCCCCACCAACGCGCA 58317 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCT 868938 |||||||| |||| ||||||||| |||||||||| || || ||| || |||| ||| Sbjct 58316 CGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATC-CCCT 58258 Query 868939 GGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGC 868997 | | || || | |||| || || | | ||| || ||||| || || |||| Sbjct 58257 TGACCCGCTCCTCGCTCAGCTTCTTCCTCAGTAGTGAGTACAGAAGGCACGCGAAATCGC 58198 Query 868998 AGTGCAACCC 869007 ||||||| || Sbjct 58197 AGTGCAAGCC 58188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104841799199415