Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq143 212 1e-48 seq83 134 2e-25 seq607 127 3e-23 seq105 120 5e-21 seq264 116 6e-20 >seq143 Length=298601 Score = 212 bits (234), Expect = 1e-48 Identities = 238/318 (75%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| |||||| ||| ||| || ||||| | ||||||||||| ||| Sbjct 58181 TCGCGA--GATCAACTCGTTGGAGAAGGTGAGTCCCGGCATCAACCCGCGCTTCTTTAGC 58124 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 || |||||||| ||||| || || ||||| ||||| || |||||| ||| ||| ||| | Sbjct 58123 CAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAGGCGATG 58064 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 || |||||||| || | || ||| || |||||| | ||||||| ||| Sbjct 58063 AGGCGCTCGGCGAAGGACTCGGAGCCGTC------GATCCAGCGGAGGGCCCACTGGGCC 58010 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || ||| || | || || |||||||||||||| |||||| || ||||||| | | Sbjct 58009 TTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCGGAAGAGGCGGCTCTTCTCGGCGGAA 57950 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| |||||| |||| |||||| ||| | || ||||||||||| ||||||||| Sbjct 57949 TCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACATTTCGGAGTGGATGTTCTCGATGGCG 57890 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 57889 ATCTGGAAGCCGTAGAAG 57872 Score = 185 bits (204), Expect = 1e-40 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || ||||||||||||||||| | ||||| || ||||| ||||||||| Sbjct 57865 GCCTCCGCGACCTGGACCTCCTTCATGAACCCACCGGCGAGATTCTCTAGGACGATGCCG 57806 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| |||| ||||| ||||||| | |||| Sbjct 57805 TCGGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAGG 57746 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | | | ||| |||| | ||||||||||||||||||||||||||| |||||| Sbjct 57745 GCTTCGAACTGGCGGATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGGCC 57686 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 |||||||| |||||||||||||| ||| |||| |||| ||||||| || || Sbjct 57685 TCGGCCTTCTTGTACATCTCCCAGATCTCCGGGTACTGGATCGGGAACATGCAGAACCGG 57626 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 | ||||||| | || || |||||| Sbjct 57625 TCGGGGTTCGGGGCGAGAAGGGGCTCG 57599 Score = 127 bits (140), Expect = 3e-23 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || | | |||||| ||||||||||| |||| | ||| |||| ||||||| Sbjct 58495 TACTCACCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGATATCAGCTCCATC 58436 Query 793968 CACGGGAACGGGTT-GGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCG 794026 || |||||||| || || ||| |||| ||||||| |||| | || || || Sbjct 58435 CAATCAAACGGGTTCTGCACTC-CGTACACCTTCCCGCACCCTAGCGCACCCAGAAGCCG 58377 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CA 794085 |||||||| ||||| |||||||||| ||| || | |||||| || | | ||| || Sbjct 58376 ATCGGCGACAAATTCGATGTACTGGCTCATCAGTTCCCGGTTCATCCCCACCAACGCGCA 58317 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATC 794141 | ||||||| |||| |||||||| |||||||||| || || ||| || |||| Sbjct 58316 C-GGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATC 58262 >seq83 Length=394602 Score = 134 bits (148), Expect = 2e-25 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||||||||||||||| || |||||||||||| |||| || |||||| | | Sbjct 382581 TGAACTTGGTGACGGCCTTGGTACCTTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 382640 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||||||||||||||||| || | ||| ||| |||||| | Sbjct 382641 GGACGAGCCTGACGGCGGTCTGGATCTCGCCGGAGGTGATGGTGGGCTTCTTGTTGTACC 382700 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || | | |||||| | ||| |||| |||||||| | || ||||| Sbjct 382701 TGGCGAGCCTGGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTAATGAAGCTGTTCA 382760 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | | |||||| || | ||| ||||| |||||||| ||||||||| Sbjct 382761 TTATCCCCATCGCCTAGCCGGAGATCCCAATGTCCGGGTGGACCTGCTTCAGCACCTTG 382819 >seq607 Length=112236 Score = 127 bits (140), Expect = 3e-23 Identities = 174/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| ||||| |||||||| ||||| |||||| |||| || || ||| ||| Sbjct 9736 TGAACTTGGTGACAGCCTTAGTACCCTCGGAGACAGCGTGCTTGGCGAGCTCACCGGGCA 9795 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 | || || ||||||||||||||||| |||| || || || |||| ||| || Sbjct 9796 ACACCAACCGGACGGCGGTCTGGATCTCCCGGGAAGTGA---TGGTGGGCTTCTTATTGT 9852 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | || || | | |||||| ||| |||| |||||||||| || || Sbjct 9853 ACCTAGCGAGCCTGGAGGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGT 9912 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||||||| ||| | ||| | ||||| || | ||| ||||| |||||||| ||||||| Sbjct 9913 TCATGATCCCCATGGCCTTGCTCGAGATCCCGATGTCCGGGTGGACCTGCTTCAGCACCT 9972 Query 1485707 TG 1485708 || Sbjct 9973 TG 9974 >seq105 Length=348175 Score = 120 bits (132), Expect = 5e-21 Identities = 173/240 (72%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| || || |||||||||||| |||||| || ||| ||| || Sbjct 63920 ACTTGGTGACGGCCTTGGTTCCTTCGGAGACGGCGTGCTTGGCCAACTCACCGGGCAAGA 63861 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCG---GGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||||||||||||||| || |||| | ||| || |||||| | Sbjct 63860 CCAATCGGACGGCGGTCTGGATCTCCCGCGAGGTGATGGTCGGCTT---CTTGTTGTACC 63804 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||| || | ||| || | || |||| |||||||||| ||| |||| Sbjct 63803 TGGCCAATCGCGAAGACTC-CTGAGCAAGCTTCTCGAAGATGTCGTTGATAAAGCTGTTC 63745 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||||| ||| |||||| || | ||| || || |||||||| || |||||| Sbjct 63744 ATGATCCCCATCGCCTTGCCGGAGATTCCGATGTCCGGATGGACCTGCTTCAGGACCTTG 63685 >seq264 Length=208598 Score = 116 bits (128), Expect = 6e-20 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| || || || ||| |||| || || ||| | | Sbjct 190595 TGAACTTGGTGACGGCCTTGGTCCCCTCGGAAACCGCATGCTTGGCGAGCTCTCCGGGAA 190654 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| | ||||||||||||||||| || | | |||||| |||||| | Sbjct 190655 GGACCAGCCTGACGGCGGTCTGGATCTCCCGAGAGGTGATCGTCGGCTTCTTGTTGTACC 190714 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || | |||||| | ||| |||| |||||||||| || ||||| Sbjct 190715 TTGCGAGTCTTGAGGCCTCCTGGGCGAGCTTCTCGAATATGTCGTTGATGAAACTGTTCA 190774 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| ||||||| || | ||||||||| |||||||| | |||||| Sbjct 190775 TGATTCCCATGGCCTTGCTGGAGATTCCGATGTCGGGGTGGACCTGCTTCAAGACCTTG 190833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913268444164805