Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq168 86.0 5e-12 seq19 84.2 2e-11 >seq168 Length=274740 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || |||||| | || ||||| ||||| ||| |||| ||| ||| Sbjct 147068 ATGCAGATCTTCGTGAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 147009 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| |||||| || || || || | || ||| || Sbjct 147008 -GACACCATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGTATCCCACCGGACCA 146950 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || |||||||| ||||||| | ||| | || |||||||| Sbjct 146949 GCAGAGGCTGATCTTCGCCGGCAAACAGCTTGAGGACGGCCGAACCCTCGCTGACTACAA 146890 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 146889 CATCCAGAAGGAGTCCACCCTCCACTTGGTG 146859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || || | || || || ||||| ||| | || ||| ||| | Sbjct 145928 ATGCAGATTTTCGTTAAGACCCTCACCGGGAAGACCATCACCTTGGAGGTCGAGAGCTCG 145869 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||||| || || || ||| | || ||| || Sbjct 145868 -GACACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCA 145810 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| || || || ||||| ||||||| | || ||||||||||||| Sbjct 145809 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGGACCCTGGCGGACTACAA 145750 Query 107735 CATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 145749 TATCCAGAAGGAGTCTAC 145732 >seq19 Length=713669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| ||||| | || ||||| || || ||| | || ||| ||| Sbjct 623288 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACGATCACCCTTGAGGTCGAGAGCTC- 623230 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| || || ||||| | ||| ||| || Sbjct 623229 CGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCA 623170 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || |||||||| ||||||| || | ||||||||||| Sbjct 623169 GCAGAGGCTTATCTTCGCCGGGAAACAGCTTGAGGACGGTCGCACCCTCGCGGACTACAA 623110 Query 107735 CATTCAAAAGGAG 107747 ||| || |||||| Sbjct 623109 CATCCAGAAGGAG 623097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398740707598555