Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq168 134 1e-26 seq1067 127 2e-24 seq6 109 4e-19 seq343 102 6e-17 seq207 96.9 3e-15 seq19 86.0 5e-12 >seq168 Length=274740 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| ||||||||||| |||||||| || || || | ||| || Sbjct 146397 ACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCC 146456 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || || || | |||||||| ||||| || || || || ||||| || Sbjct 146457 ATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTT 146516 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || ||||||| | || | ||||| || |||||| || | || || Sbjct 146517 GTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGAT 146576 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || | ||| || |||||||| |||||| Sbjct 146577 GGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| ||||| || || || || || ||||| || || || | ||| || Sbjct 146169 ACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCC 146228 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||||||||| ||| | ||||| || ||||| || || || || ||||| || Sbjct 146229 ATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTT 146288 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | |||||| | || | ||||| || ||| || || | || | Sbjct 146289 GTCTTG-AATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGA 146347 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | || |||||||| |||||||| Sbjct 146348 TGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| ||||| || || || || |||||||| || || ||| Sbjct 145930 CCACCACGCAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGCA 145989 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| ||||| || ||||| || | ||||| || ||||| || || || Sbjct 145990 AGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 146049 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || |||||| | || || | || | ||||| || || || Sbjct 146050 ATACCCTCCTTGTCCTG-AATTTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCGAC 146108 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| || || || || || ||||| || || || ||||||||| Sbjct 146109 TTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATCTGCATT 146157 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| ||||||||||| || ||||| || || || ||||| || || || Sbjct 146613 TCCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 146672 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || || ||||| || ||||| ||| | || | ||| ||||| || || || Sbjct 146673 GAGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGG 146732 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || | ||| ||||| | || | ||||| || || || Sbjct 146733 GATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAAC 146792 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || || | ||| ||||| || || ||||| Sbjct 146793 CTCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 >seq1067 Length=57296 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| |||||||| | ||||| || ||||| || || ||||||||||||||| Sbjct 37169 CCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCA 37228 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| ||||| ||||| ||||| | |||| | ||||| || || || Sbjct 37229 AGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGG 37288 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| ||| |||| ||||| | || | ||||| || || || Sbjct 37289 ATTCCCTCCTTGTCTTG-AATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCAC 37347 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || || || || | || || ||||| ||||||||| Sbjct 37348 CTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCATT 37396 >seq6 Length=1122688 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | || || ||||| ||||||||||| || || || ||||| || || || Sbjct 399113 TCCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 399172 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || || ||||| || || || || | |||| | ||||| || || || Sbjct 399173 GAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 399232 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| |||||||| | || |||||| | || | |||||| || || || Sbjct 399233 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGAC 399292 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||||| || || || |||| |||||| || || |||||||| Sbjct 399293 CTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq343 Length=177656 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || |||| |||||| || || || || |||||||| |||||||| Sbjct 100708 TCCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGAATGTTGTAATCCGC 100767 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || | ||| || |||||| | |||||||| ||||||||||| || Sbjct 100768 AAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGAGG 100827 Query 29679 AATACCCTCTTTGTCTTGTAA 29699 ||| || || ||||| || || Sbjct 100828 AATTCCTTCCTTGTCCTGAAA 100848 >seq207 Length=245090 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | || || |||| || || ||||| || || || ||||| || || || Sbjct 172640 TCCTCCCCTGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 172581 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || || || || || || || ||| | |||| | ||||| |||||||| Sbjct 172580 GAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGG 172521 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| || || || | || || ||| | || | ||||| || || || Sbjct 172520 AATCCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGAC 172461 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| || || |||||||| || Sbjct 172460 CTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 172410 >seq19 Length=713669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||||| |||||| ||| || || || ||||| || || || Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || || || || || || | |||| | ||||| ||||| ||| Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || ||||| | || | ||||| || || || Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACC 623469 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||| |||||| |||||||||||||| Sbjct 623470 TCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385087767422295