Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 seq257 147 2e-30 seq716 141 1e-28 seq168 118 1e-21 seq272 114 1e-20 seq964 95.1 1e-14 seq1194 87.8 2e-12 >seq1 Length=1764766 Score = 223 bits (246), Expect = 4e-53 Identities = 255/343 (74%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 159442 CAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 159501 ||||||||| || || |||||||| ||||| || || |||||||| ||||| || |||| Sbjct 983302 CAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCT 983243 Query 159502 TCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTA 159561 | || |||| ||||| || || | ||| | |||||||||||||| ||||| || || | Sbjct 983242 TTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 983183 Query 159562 TGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACG 159621 ||| |||||| | |||| | | ||||| ||| | ||||| ||||| || | Sbjct 983182 CTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATG 983123 Query 159622 ATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCA 159681 | ||||| |||||| ||| | ||||| |||||||| |||||||| || | |||||||| Sbjct 983122 ACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCA 983063 Query 159682 AGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATG 159741 | || ||||| | || || || | ||||||||| |||| || ||||| || |||| Sbjct 983062 AAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 983003 Query 159742 AAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 ||||||| || ||||| || || |||||| | | || ||||| Sbjct 983002 AAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGC 982960 >seq257 Length=213233 Score = 147 bits (162), Expect = 2e-30 Identities = 245/352 (70%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 159156 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCA 159215 ||||| || || ||||| | ||| |||| ||||||||| || ||||| || || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 159216 CTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTC 159275 ||||||| ||||||| || || || ||||| || || || ||||| | ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 159276 CTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTT 159335 | || || | |||||||| | ||||||||| | ||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 159336 GCTG--GTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATA 159393 || | |||| | |||| || | |||| ||||||||||| || | ||||||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 159394 CATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGG 159453 | |||| || |||| || | ||| || || | ||| | |||||||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 159454 AGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 159505 | | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq716 Length=92840 Score = 141 bits (156), Expect = 1e-28 Identities = 201/280 (72%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 157512 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCA 157571 || ||||||||| || |||||| ||||||| |||| |||| | || || || || ||||| Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 157572 CAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTT 157631 | |||| |||||||| || || | ||| | || || ||||| |||||||| || || | Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 157632 GTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAA-CAACTGAAA 157690 ||| |||||| || || | || || || | | ||| | |||| | || |||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTC-TAGTTTGATAAGGAAAACCACAGAAA 34018 Query 157691 CAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTG 157750 || || || | ||||||| ||||||||||| ||||| || || || || || | Sbjct 34017 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAG 33958 Query 157751 CTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGC 157790 | || || ||||| || || || ||||||||||||| || Sbjct 33957 CCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq168 Length=274740 Score = 118 bits (130), Expect = 1e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 157839 TGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGG 157898 ||| || || || ||||| ||| | | || | |||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 157899 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGA 157958 ||| || ||||| || | | ||||| || | |||||||| | || |||| || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 157959 TGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 158018 | || | ||||| ||| |||||||||||||||||||||||| ||||| || || ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 158019 CCCACTGGATCTTGCTGCTGCAGAA 158043 | | || || || || |||| |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTGTAGAA 245437 >seq272 Length=206342 Score = 114 bits (126), Expect = 1e-20 Identities = 344/518 (66%), Gaps = 20/518 (4%) Strand=Plus/Minus Query 158906 GTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCA---AACTTTCTTA-CAGCA 158960 |||||| |||||| | || | ||||||| | || || | | ||||| |||| | | Sbjct 147162 GTATACTCATGGATTAGCAAGTTCCTATTTGGAAGGATATATGTAACTT-CTTAGCTGTC 147104 Query 158961 GCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAG 159020 | |||| ||||| | | || | | | |||||| | || | || |||| |||||| Sbjct 147103 ATAATTTCTACTCCCGTTAATAGTTTAGCACATTCTTTAATGTTACTATGGGATCCTGAA 147044 Query 159021 GCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTC 159080 || ||| | ||||| | ||| ||| | | || || |||| |||||| | || Sbjct 147043 GCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGGACTTTTGTTGTTCTT 146984 Query 159081 CACGGTGCCTTTGCC--CTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTC 159137 || || | ||| | ||||| ||||| | | || || |||||||| || || ||| Sbjct 146983 CATGG--CATTTTCAAACTAATAGGTTTTACATTACGTCAATTTGAACTTGCTCGATCTG 146926 Query 159138 ATCGGTATCCGTCCCTACAATGCTATTG---CGTTCTCTGGTCCTATTGCTGTTTTTGTC 159194 || | | ||| || ||| ||| | ||||| | ||| |||| |||||||| Sbjct 146925 TTCAAT-TGTATCCTTATAATATTATAATCACATTCTCCGCTCCAATTGTTGTTTTTGGT 146867 Query 159195 AGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGG 159254 || ||| | || || || | | |||||| ||| |||| | | | || ||| | Sbjct 146866 TCTGTATTCTTGATTTATCCGTTAGTTCAGTCTGGTT--TTTTACACCCAGT--TTTAGC 146811 Query 159255 GTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAAC 159314 || | || ||||| | || ||||| | |||||||| || ||||||| | | ||| Sbjct 146810 GTAGTAGCTATATTACGATTTACCCTCTTTTTCCAAGGGTTTCATAATTGGAAATTTAAC 146751 Query 159315 CCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCAT 159374 || || || ||||||||||||||||| | || ||| ||||| |||| |||||| ||| Sbjct 146750 CCATTTCACATGATGGGAGTTGCTGGGGTATTA-GTGTTGCACTGCTATGTGCTATCCAT 146692 Query 159375 GGGGTCACAGTTGAAAATACATTATACGAGGATGGAGA 159412 || | | || || ||||| |||| || ||||| || Sbjct 146691 GGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGA 146654 >seq964 Length=67008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 159481 ACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCT 159540 ||||||| ||||| || ||||| || ||| ||||| || || || ||| | ||||||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 159541 TTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTG 159600 ||||||| ||| | || || | ||| ||| || | |||| | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 159601 CTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAG 159660 || | ||| | ||||| || || ||||| |||||| ||| |||| |||||||| | Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 159661 AATTTGA 159667 ||||||| Sbjct 23599 AATTTGA 23605 >seq1194 Length=46772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/292 (67%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 158804 GGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTGC 158863 ||| |||||||||||||| | ||||| || || | || | ||| ||| | | Sbjct 21570 GGACCGTTTCGTTTTTGTAGATTGGTCCGGTCTATTGCTATTTTTTTGTGCCTATTTCAC 21511 Query 158864 TATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGC 158923 | | || |||||| | | || | || || | || || ||||| |||||| | || Sbjct 21510 TTTAGGAGGTTGGTTCATAGGTATAACCTTTGTAACTTCATGCTATACTCATGGATTAGC 21451 Query 158924 TACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGC 158983 | ||||||| | || ||||| | || || | |||||||||||| | | || Sbjct 21450 AAGTTCCTATTTGGAATAATACAACTTCTTAACTGCCGTAGTTTCGACTCCCGTTAATAG 21391 Query 158984 TATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGT 159042 | | | || ||| | |||| || |||||||||| || ||||| || ||| ||| | Sbjct 21390 TTTTGCACACTCTTTGTTGCTACTAGGGGGTCCTGAAGCACAAGGCGATTTTACTCA-TT 21332 Query 159043 GGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGC 159094 || ||| | || || || |||| |||||| || ||||||||||| ||||| Sbjct 21331 GGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCACTCCACGGTGCTTTTGC 21280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545082788319600