Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1 212 8e-50 seq716 188 9e-43 seq257 167 3e-36 seq2 100 3e-16 seq964 93.3 5e-14 seq272 89.7 6e-13 seq139 87.8 2e-12 >seq1 Length=1764766 Score = 212 bits (234), Expect = 8e-50 Identities = 257/350 (73%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| |||||||| || ||||| |||||||| || ||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 |||||| | ||| |||||| ||||||| || ||||||| | | ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| | | || |||| | | || || ||| | ||||| ||||| ||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 || || |||||| ||| | ||||| ||||||||||| || ||||| | ||| || || Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907 || ||||| | || || || | ||||||||| |||| || ||||| || |||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACTGTGATT 179957 ||||| || ||||| || || || ||| || |||| ||||| || | ||| Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAATT 982951 >seq716 Length=92840 Score = 188 bits (208), Expect = 9e-43 Identities = 209/279 (75%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 178019 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 178078 || ||||||||| || |||||| ||||||| |||| ||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 178079 CAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 178138 | |||||||||||||||| || | ||| | ||||| ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 178139 TTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAAC 178198 ||| |||||| ||||| | || || ||| | | | | || ||||||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 178199 TGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGC 178258 ||| || || | ||||||| ||||| ||||| |||||||| ||||| || || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 178259 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGC 178297 || |||||||| || || || ||||||||||||||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 167 bits (184), Expect = 3e-36 Identities = 250/353 (71%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 179320 AATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCA 179379 ||||| || || || | | ||| |||| || || ||| |||||| || || || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 179380 CTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTC 179439 || || | ||||||||||||| || |||||||| || || || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 179440 CTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTT 179499 | || || || ||||| || | || |||||| | ||| | |||||||||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 179500 GC--AGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATA 179557 || |||||| |||||| |||| |||| | ||||||||||| || |||| |||| Sbjct 14305 GCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATA 14248 Query 179558 CATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGG 179617 | || | |||||||| || | ||| ||||| | || || | || ||| | Sbjct 14247 CCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTG 14188 Query 179618 AGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGG 179670 | | || ||||| |||||||| || ||| | |||||||| || ||||| ||| Sbjct 14187 AATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGGG 14135 >seq2 Length=1456787 Score = 100 bits (110), Expect = 3e-16 Identities = 109/143 (76%), Gaps = 9/143 (6%) Strand=Plus/Plus Query 178235 AGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATA 178294 ||||||||| ||||| || || || || |||||||| || || || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 178295 TGCATCGTTCAACAACTCC-CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTG 178353 ||| | ||| ||| ||||| | ||||||||| | || || ||||||||||| | Sbjct 1455466 TGC-TAGTT-------TCCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGG 1455517 Query 178354 GAATCTGGTTCACCGCACTTGGT 178376 | || ||||| ||||| ||||| Sbjct 1455518 GTATTTGGTTTACCGCTTTTGGT 1455540 >seq964 Length=67008 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 179645 ACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCT 179704 |||| |||||||| || ||||| |||||| ||| |||||| |||||||| || |||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 179705 TTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAG 179764 ||| | | ||| | || || | ||| | | | | | || |||| | | || || | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 179765 CTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTG 179824 || | ||| | ||||| ||||| || || |||||| ||| |||| |||||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 179825 AGTTCGAGA 179833 | || |||| Sbjct 23599 AATTTGAGA 23607 >seq272 Length=206342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 179443 CTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCA 179502 || || || ||||| || || || |||| | | ||||| |||||||||||||||||||| Sbjct 146786 CTCTTTTTCCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCT 146727 Query 179503 GGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTG 179562 || | | ||| ||| ||||| | |||||| ||||| | | ||||| ||||| || Sbjct 146726 GGGGT-ATTAGTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTA 146668 Query 179563 TATGAAGATGGAGA 179576 | ||||||||| || Sbjct 146667 TTTGAAGATGGTGA 146654 >seq139 Length=308073 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 |||||||| ||||||||||||||| | || ||| ||||||||||| ||||| |||| Sbjct 89683 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGTT 89742 Query 177945 GCATACTCTGCACCTGTTGCAGCAGC 177970 ||||| || || ||||||||||| || Sbjct 89743 GCATATTCAGCTCCTGTTGCAGCTGC 89768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605455254334200