Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1067 154 3e-32 seq168 129 1e-24 seq19 109 1e-18 seq343 89.7 1e-12 >seq1067 Length=57296 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | ||| || || ||||| ||||| || |||||||| | Sbjct 37169 CCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCA 37228 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | ||||| ||||| || ||||| ||||| || || || | || || || || || Sbjct 37229 AGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGG 37288 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||| ||||| |||||||||||||| || || || |||||||| || | || | || || Sbjct 37289 ATTCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTC-TGAGCTCTCCAC 37347 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| ||||| | |||||| ||||| ||||||||| Sbjct 37348 CTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCATT 37396 >seq168 Length=274740 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| ||||| || || ||||| || || || |||| || | | || Sbjct 146169 ACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCC 146228 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || |||||||| || |||||||| | || || || ||||| || || || ||||| Sbjct 146229 ATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTT 146288 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || || ||||| ||||| || || ||| || ||||| || || Sbjct 146289 GTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGAT 146348 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| ||||| |||||||| Sbjct 146349 GGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || ||||| || || || || ||||| || || || || | Sbjct 145928 TACCACCACGCAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTG 145987 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | || || || || || || || || || ||||| | || || || ||||| | Sbjct 145988 CAAGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 146047 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || ||||| || || || || || ||||| || || || | || Sbjct 146048 GGATACCCTCCTTGTCCTGAATTTTGGCCTTCACGTTGTCAATGGTGTCCG-AGCTCTCG 146106 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||||| || ||||| || ||||| ||||| || || ||||||||| Sbjct 146107 ACTTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATCTGCATT 146157 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || ||||||||||| || || || || | || ||| || Sbjct 146397 ACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCC 146456 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || || ||||| | ||| || || ||||| || || || ||||| Sbjct 146457 ATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTT 146516 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| ||||| ||||| || || |||||| ||||| || || Sbjct 146517 GTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGAT 146576 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | ||||| |||||||| |||||| Sbjct 146577 GGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 Score = 113 bits (124), Expect = 9e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || ||||| || ||||| ||||| || || | || | || ||| Sbjct 145714 CGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCG 145773 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| || || || || || || || ||||| || || ||||| Sbjct 145774 TCCTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTG 145833 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || ||||||||||| || ||||| || || || || || | || || ||||| || || Sbjct 145834 TCCTGAATCTTTGCCTTCACATTGTCGATGGTGTC-CGAGCTCTCGACCTCCAAGGTGAT 145892 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 145893 GGTCTTCCCGGTGAGGGTCTTAACGAAAATCTGCAT 145928 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || || |||| || ||| ||| Sbjct 146854 CGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCG 146913 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| || || ||||| || || || || || || || || || ||||| Sbjct 146914 TCCTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTG 146973 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| ||||| ||||| || || || ||| ||| || || | || || Sbjct 146974 TCTTGAATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATG 147033 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | || || || || |||||||| Sbjct 147034 GTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 >seq19 Length=713669 Score = 109 bits (120), Expect = 1e-18 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| || || || ||||| || || ||||| | || | | |||||| || | || Sbjct 623542 TGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCCAACTGC 623601 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || || || || || || || |||||||||||||| || ||||| Sbjct 623602 TTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCTTCCTTATCCTGGATCTTG 623661 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || || ||||| ||| || | || ||||| | ||||||||||| || || Sbjct 623662 GCCTTGACGTTGTCGATCGTGTCA-GAGCTCTCGACTTCTAGGGTTATCGTCTTACCGGT 623720 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| Sbjct 623721 TAGGGTTTTGACGAAGATCTGCAT 623744 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| ||||| || || ||||| || || ||||| | || | | || Sbjct 628718 ACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCC 628777 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || |||||||| ||||| || | || || || || || ||||||||||| Sbjct 628778 GTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTT 628837 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| || || || || || || || || || | || || || | ||||| Sbjct 628838 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-GGAGCTCTCGACCTCGAGAGTTA 628896 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || | || || || || |||||||| Sbjct 628897 TGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 628933 Score = 102 bits (112), Expect = 2e-16 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || ||||| || ||||| ||||| ||||||| || | | ||| Sbjct 622845 ACGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACC 622904 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || || || |||||||| || | || || || || || || || ||||| Sbjct 622905 ATCCTCCAACTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTT 622964 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| || || || || || || || || || | || || || | || | Sbjct 622965 GTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCG-AGCTCTCAACCTCGAGGGTGA 623023 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||||| || | ||||| ||||| ||||||||| Sbjct 623024 TCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 623061 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || ||||| || ||||| || || || || | Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| ||||| || || || ||||| || ||||| || | || || || ||||| Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || ||||||||||| || ||||| || || || || || || || || || | || || Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-GGAGCTCTCCAC 623468 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || |||||||| || || | || || |||||||||||||| Sbjct 623469 CTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || || | || | | |||||| || || ||||| || || ||| Sbjct 623098 TCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAG 623157 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || || || || || || || || |||||||| || || ||||| ||||| || || Sbjct 623158 ATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTG 623217 Query 82740 TCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 || || || || || | || || || | || ||||||||||| || | || || || Sbjct 623218 TCGATGGTGTCGG-AGCTCTCGACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCAC 623276 Query 82799 AAATATCTGCAT 82810 ||| |||||||| Sbjct 623277 AAAAATCTGCAT 623288 >seq343 Length=177656 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | | || ||| | || ||||| || || ||||| || || ||||| | Sbjct 100709 CCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGAATGTTGTAATCCGCA 100768 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | || || ||||| | ||| || |||||||| || | ||| || ||||| ||||| Sbjct 100769 AGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGAGGA 100828 Query 82704 ATTCCTTCCTTATCTTGAA 82722 ||||||||||| || |||| Sbjct 100829 ATTCCTTCCTTGTCCTGAA 100847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981475032390305