Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq168 141 9e-29 seq6 140 3e-28 seq19 138 1e-27 seq420 132 5e-26 seq1067 113 4e-20 seq207 96.9 3e-15 >seq168 Length=274740 Score = 141 bits (156), Expect = 9e-29 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||||||| ||||| || ||||| ||| | | || | |||||||||| Sbjct 146635 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGCCCGTCCTCGAGC 146694 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | ||||| | ||||||||| || |||||||| |||||||| ||| Sbjct 146695 TGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATT 146754 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||||| | ||| || |||| ||||| |||||| ||| Sbjct 146755 TTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTTTTCCCG 146814 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 146815 GTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| |||||||| || ||| || | |||||||||||||||||| Sbjct 145731 GGTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCGTCCTCGAGCTGCTTGCC 145790 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| |||| ||||||||| ||||| ||||| |||||||| |||||| ||| Sbjct 145791 AGCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTT 145850 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | ||| || || | ||||| ||| || ||||| || || Sbjct 145851 CACATTGTCGATGGTGTCCGAGCTCTCGACCTCCAAGGTGATGGTCTTCCCGGTGAGGGT 145910 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 145911 CTTAACGAAAATCTGCAT 145928 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || ||| || | | | |||||||| || ||||| Sbjct 146188 GTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCA-TCCTCGAGTTGTTTGCC 146246 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || |||||||| |||||||| ||||| ||| Sbjct 146247 CGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCCTT 146306 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||||| | || || || | ||||| ||| || ||||| ||||| Sbjct 146307 GACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGT 146366 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 146367 CTTAACAAAAATCTGCAT 146384 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| |||||||| || ||||| ||| | | || | | | |||||||| Sbjct 146407 AAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCA-TCCTCGAG 146465 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | | ||||||||| || |||||||| |||||||| ||| Sbjct 146466 CTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGAT 146525 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | |||| ||||||| | || || || | ||||| |||||| || Sbjct 146526 CTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGTTTTCCC 146585 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || || ||||| Sbjct 146586 GGTGAGGGTCTTGACAAATATTTGCAT 146612 Score = 102 bits (112), Expect = 8e-17 Identities = 152/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 || || | ||| ||||| ||||| || ||||| || | | || || | | |||||| Sbjct 145951 AAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGCAAGGGTCCTG--CCA-TCCTCG 146007 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| ||| | || | || ||||||||| || ||||| || |||||||| || Sbjct 146008 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTC-CTG 146066 Query 133572 ATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 | ||| | ||| | | |||| ||||| | | ||| || || | |||| ||| || Sbjct 146067 AATTTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCGACTTCCAAAGTGATGGTCTT 146126 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||| || || |||||||||||||| Sbjct 146127 TCCGGTCAAGGTCTTCACGAAAATCTGCAT 146156 >seq6 Length=1122688 Score = 140 bits (154), Expect = 3e-28 Identities = 154/203 (76%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| | | || || || |||||||||||||| | Sbjct 399144 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCG--TCCTCGAGCTGCTTTC 399201 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || |||||||||||||||||||| || |||||||| |||||| || Sbjct 399202 CGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCT 399261 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| || ||| || || | ||| | ||| || || || || | Sbjct 399262 TGACATTGTCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTTTCCCGTTAGGG 399321 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 |||| ||||| |||||||||||| Sbjct 399322 TTTTCACGAAGATCTGCATGGCT 399344 >seq19 Length=713669 Score = 138 bits (152), Expect = 1e-27 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||||||| | | || || || |||||||||||||||| Sbjct 623776 GTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCG--TCCTCGAGCTGCTTGC 623833 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| ||||| || || |||||||| |||||| || Sbjct 623834 CGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCCT 623893 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | ||| || |||| |||| ||| |||||||| || | Sbjct 623894 TGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGG 623953 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 623954 TTTTGACGAAGATCTGCAT 623972 Score = 132 bits (146), Expect = 5e-26 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||||||| | | || || || || ||||||||||| | Sbjct 628737 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCG--TCTTCGAGCTGCTTTC 628794 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || ||||| ||||||||||| |||||| || Sbjct 628795 CAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCT 628854 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | ||| || |||| || | ||| |||||||| || | Sbjct 628855 TGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGG 628914 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 628915 TTTTGACGAAGATCTGCAT 628933 Score = 111 bits (122), Expect = 2e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGCCCGCG 133526 ||| ||||| || ||||| ||| | | || || || ||||| |||||||| || ||| Sbjct 623325 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCG--TCCTCCAGCTGCTTTCCGGCG 623382 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586 | || || ||||||||||| ||||| || |||||||| || |||||| ||||| Sbjct 623383 AAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTGGATCTTGGCCTTGACG 623442 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | || | ||||||| | |||||| || | ||||| || || ||||| || ||||| Sbjct 623443 TTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTC 623502 Query 133647 ACGAAAATCTGCAT 133660 || || |||||||| Sbjct 623503 ACAAATATCTGCAT 623516 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| || | | ||| ||| |||||| ||||| || || ||| Sbjct 623097 CTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACC-GTCCTCAAGCTGTTTCCCGGCGA 623155 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || |||| ||||||||| || || || ||||||||||| |||||| || | | Sbjct 623156 AGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCACGT 623215 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||||| | ||| || || | ||||| || |||||||| || ||||| | Sbjct 623216 TGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCA 623275 Query 133648 CGAAAATCTGCAT 133660 | ||||||||||| Sbjct 623276 CAAAAATCTGCAT 623288 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| ||||||||||| | | ||| ||| | ||||| | |||||| | Sbjct 622863 GGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCA-TCCTCCAACTGCTTCC 622921 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || || || || |||||||| |||||| || Sbjct 622922 CGGCAAAGATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCT 622981 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | | ||| || |||| ||||| || ||||| || || | Sbjct 622982 TCACGTTGTCGATTGTGTCCGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGG 623041 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 623042 TCTTGACAAAGATCTGCAT 623060 >seq420 Length=153407 Score = 132 bits (146), Expect = 5e-26 Identities = 151/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| ||| | | || || || |||||||||||||||| Sbjct 119125 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCG--TCCTCGAGCTGCTTGC 119182 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| || ||||| || |||||||| |||||| || Sbjct 119183 CGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTGGTCT 119242 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| || ||| || |||| ||| | ||| || || || || | Sbjct 119243 TCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTTAGGG 119302 Query 133642 TTTTTACGAAAATCTGCATGG 133662 |||| ||||| |||||||||| Sbjct 119303 TTTTCACGAAGATCTGCATGG 119323 >seq1067 Length=57296 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || |||||||| || || ||| |||| |||||||||||||| || ||||| || |||||| Sbjct 37241 TCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCCTTG 37300 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| |||||| | | |||||| || | ||||| | Sbjct 37301 TCTTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCACCTCAAGGGTGATG 37360 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || || ||||||||||| Sbjct 37361 GTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCAT 37395 >seq207 Length=245090 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| | | || || || ||||| |||||||| | Sbjct 172609 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCG--TCCTCCAGCTGCTTTC 172552 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || || || || ||||| || |||||| || Sbjct 172551 CGGCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCT 172492 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | || ||| || || | ||| | ||| || || || || | Sbjct 172491 TCACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGG 172432 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 172431 TTTTCACGAAGATCTGCAT 172413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483251632933800