Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq207 102 5e-17 seq1067 98.7 7e-16 seq6 84.2 1e-11 seq168 82.4 5e-11 >seq19 Length=713669 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| ||| ||||||||||| || || |||||||| |||| ||| || || | Sbjct 623301 ACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCC 623360 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || |||||||| || |||| ||||||||| || | || | ||||| || Sbjct 623361 GTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTT 623420 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || || || | | || | ||| | ||||||| ||||| || | |||| Sbjct 623421 ATCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGA 623479 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || |||| ||||| ||||| ||||||||| Sbjct 623480 TCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCATA 623517 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| ||| ||||||||||| || || |||||||| || | | Sbjct 623062 CCACCACGGAGACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCG 623121 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | ||||| ||||| || || | | |||||| || | || Sbjct 623122 AGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGA 623181 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || |||| || | ||| | ||||||| || || Sbjct 623182 ATACCTTCCTTGTCCTGGATCTTGGCTTTC-ACGTTGTCGATGGTGTCGGAGCTCTCGAC 623240 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||||| || || || | ||||| ||||| |||||||| Sbjct 623241 CTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || ||||||||||||| ||| || || |||| || Sbjct 628725 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCG 628784 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| || || |||| ||||||||| || |||| | ||||| ||||| Sbjct 628785 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGG 628844 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | || | ||| | ||||||| || || || | || || || || Sbjct 628845 ATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTT 628903 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 || |||| ||||| || |||||||||||| || Sbjct 628904 GCCGGTTAGGGTTTTGACGAAGATCTGCATATTT 628937 >seq207 Length=245090 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || |||||| ||| || || |||||||| |||| ||| || || |||| ||| Sbjct 172621 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCC 172562 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||||||||| |||| ||||||||| || |||| | || || || || Sbjct 172561 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGG 172502 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| ||| |||| ||| | |||||| || || || || | || || || || Sbjct 172501 ATCTTCGCCTTC-ACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTT 172443 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||||||||| Sbjct 172442 CCCCGTTAGGGTTTTCACGAAGATCTGCAT 172413 >seq1067 Length=57296 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||| | | || | | | || ||||| || Sbjct 36965 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGC 37024 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||||| | |||||| ||| |||| | || || ||||| ||||||| Sbjct 37025 TTCCCTGCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATTTTC 37084 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| |||| ||| || ||||| | | | ||||| || | |||||||| || || | Sbjct 37085 GCCTTC-ACATTGTCGACAGTGTC-CGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAG 37142 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || ||||||||||| Sbjct 37143 TCAAGGTCTTCACGAAGATCTGCAT 37167 >seq6 Length=1122688 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | ||||| || || ||| ||| || || |||||||| |||| | Sbjct 399114 CCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 399173 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || |||| |||||||| || | || Sbjct 399174 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 399233 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || || | ||| ||| | |||||| || || || Sbjct 399234 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CATTGTCGATAGTGTCGGAGGACTCGAC 399292 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || |||| ||||| || ||||||||||| Sbjct 399293 CTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq168 Length=274740 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || |||||||| || | ||| || || |||| || Sbjct 146859 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTC 146918 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||| ||||| || |||| | |||||| || | || | ||| || ||||| Sbjct 146919 AAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTG 146978 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715 ||| || ||| | ||| || | |||||| |||| ||||| || | ||||| | Sbjct 146979 AATCTTAGCTTTGA-CATTATCGATGGTGTCAGAGCTT---TCCACCTCGAGGGTGATGG 147034 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| || ||||||||||| Sbjct 147035 TCTTGCCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328591849790400