Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq716 143 8e-30 seq2 104 7e-18 seq168 89.7 2e-13 >seq716 Length=92840 Score = 143 bits (158), Expect = 8e-30 Identities = 199/276 (72%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||| | || || || | || ||||||| ||| | || || ||||| || || | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTT 29217 || || |||||||| || | ||| | || || ||||| || ||||| ||||| ||||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 29218 AGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACAT 29276 ||||| || || ||||| | || || || | | ||| | | | || || ||| | Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTC-TAGTTTGATAAGGAAAACCACAGAAAATGA 34014 Query 29277 CTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGC 29336 ||| || | ||||||| || || ||||| ||||| || ||||| || |||||||| Sbjct 34013 ATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGC 33954 Query 29337 TCACGGTTACTTTGGACGTTTGATCTTCCAATATGC 29372 ||| ||||| ||||| || ||||||||||||||||| Sbjct 33953 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq2 Length=1456787 Score = 104 bits (114), Expect = 7e-18 Identities = 100/129 (78%), Gaps = 7/129 (5%) Strand=Plus/Plus Query 29310 AGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATA 29369 |||||| || ||||| || ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 29370 TGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGG 29429 |||| |||| |||||| ||||||||||| | ||||| ||||| || || || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 29430 GATTTGGTT 29438 |||||||| Sbjct 1455519 TATTTGGTT 1455527 >seq168 Length=274740 Score = 89.7 bits (98), Expect = 2e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 29422 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 29481 || ||||| |||||||| || | || || || | ||||| ||||| | || ||| Sbjct 245235 GTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGGT 245293 Query 29482 TTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGAT 29541 ||||| || || || | | | || | | |||||||| |||||||| | || | || Sbjct 245294 TTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAAT 245353 Query 29542 GTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTC 29601 | | || || ||||| || || | ||||| |||||||| |||||||||||||||||| Sbjct 245354 ATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 245413 Query 29602 CCACTTGATCTGGC 29615 | || || || || Sbjct 245414 TCTCTAGACCTAGC 245427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146616842396270