Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq168 102 2e-17 seq2 98.7 3e-16 seq139 86.0 2e-12 seq90 80.6 8e-11 >seq168 Length=274740 Score = 102 bits (112), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 19512 TGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGGCATTCAACTTGAAT 19569 ||| || || ||||||||| | ||| |||| |||| |||||| || ||||| ||| Sbjct 245234 TGTAGTAGGTATTTGGTTTACT---CTTTAGGTATTAGCATCATGGCTTTTAACTTAAAT 245290 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || ||||| || || || | | |||| | | |||||||| ||| |||| | || | Sbjct 245291 GGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTT 245350 Query 19630 GACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAAC 19689 | || | || |||||||| || || | || || ||||| |||||||||||||||||| Sbjct 245351 AATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 245410 Query 19690 TTCCCACTTGA 19700 ||| | || || Sbjct 245411 TTCTCTCTAGA 245421 >seq2 Length=1456787 Score = 98.7 bits (108), Expect = 3e-16 Identities = 106/141 (75%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 19401 AGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTA 19460 |||||| || ||||| ||||| ||||||||||| |||||||| || | || ||||| || Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 19461 CGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGG 19520 || ||| | ||||| |||| ||||| || |||||||||||||| || || Sbjct 1455466 TGCTAGTTTCCTC-------GTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 19521 CATTTGGTTTGCCGCCCTTGG 19541 ||||||||| |||| |||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGG 1455539 >seq139 Length=308073 Score = 86.0 bits (94), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||| ||||| || |||||||||||||| | | || || ||||||||||||||| ||| Sbjct 89682 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGCCCTTGGATTGCTGT 89741 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGC 19136 ||| || |||||||||||||| || || Sbjct 89742 TGCATATTCAGCTCCTGTTGCAGCTGC 89768 >seq90 Length=380041 Score = 80.6 bits (88), Expect = 8e-11 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 18744 TACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG- 18802 ||| || ||||||||||| || || |||||||| |||||| ||| | | | ||| Sbjct 122818 TACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTATTTTATTGA 122876 Query 18803 CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGC 18861 | || ||| | ||| || ||||| || ||||||||| | ||||| ||||| |||||||| Sbjct 122877 CCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTACCCCTCCAGTAGATATTGATGGT 122935 Query 18862 ATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTA 18893 || | || |||||| | || ||| ||||| Sbjct 122936 ATTCATGAACCTGTTTCTGGATCTCTACTTTA 122967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141101876404710