Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq143 351 1e-90 seq83 91.5 2e-12 seq264 86.0 9e-11 >seq143 Length=298601 Score = 351 bits (388), Expect = 1e-90 Identities = 427/575 (74%), Gaps = 13/575 (2%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| |||| |||| | ||| ||||| |||||| || Sbjct 57618 AACCCCGACCGGTTCTGCATGTTCCCGATCCAGTACCCGGAGATCTGGGAGATGTAC-AA 57676 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||||||||||||| ||||||||||||||||||||||||||| | |||| ||| Sbjct 57677 GAAGGCCGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGACCTCTCCCAGGACATCCGCCA 57736 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 | | | || | | ||||||| || ||||||| |||||||||||||| || || Sbjct 57737 GTTCGAAGCCCTCACCCCCGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTT-CG 57795 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| ||| |||||||| ||||| || ||||| | || ||||| |||||||| Sbjct 57796 CCGCCTCCGACGGCATCGTCCTAGAGAATCTCGCCGGTGGGTTCATGAAGGAGGTCCAGG 57855 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | ||||| ||| || ||||| ||||||||||||||||| ||||||||||| |||| Sbjct 57856 TCGCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAA 57915 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| ||||| |||| |||||| ||||||| | | ||||||| || |||||| | Sbjct 57916 TGTACAGCCTCCTCCTCGAGACCTACATCAAGGATTCCGCCGAGAAGAGCCGCCTCTTCC 57975 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 ||||||||||||| || || | || ||| |||||| | ||||| | |||||| Sbjct 57976 GCGCCATCGACACTGTCCCTTGCGTCGCGAAGAAGGCCCAGTGGGCCCTCCGCTGGATC- 58034 Query 1456154 ACAAGGAGGGCCTCGA-CACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCA 1456211 || ||| ||| ||| |||||||| ||| ||| ||| ||| ||||||| || | Sbjct 58035 -----GACGGCTCCGAGTCCTTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGA 58089 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||| ||||| || || |||||||||||||| ||||| ||||||||||| | ||||| | Sbjct 58090 TCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGG 58149 Query 1456272 GTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 | | || ||| |||||| || ||| |||||| Sbjct 58150 GAC-TCACCTTCTCCAACGAGTTGATC--TCGCGA 58181 Score = 122 bits (134), Expect = 1e-21 Identities = 167/227 (74%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 1456516 CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCC 1456575 |||| |||| || ||| || || |||||||||| |||||||| |||| ||||||| Sbjct 58256 CAAGGGGATCGTCCGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCC 58315 Query 1456576 GGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCC 1456635 | ||| | | || |||||| | || ||| |||||||||| |||||| |||||| Sbjct 58316 GTGCGCGTTGGTGGGGATGAAC-CGGGAACTGATGAGCCAGTACATCGAATTT-GTCGCC 58373 Query 1456636 GACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC-AACCCGTTCC 1456694 || || || || | ||||| || ||||| |||| ||| ||| || |||||||| Sbjct 58374 GATCGGCTTCTGGGTGCGCTAGGGTGCGG-GAAGGTGTAC-GGAGTGCAGAACCCGTTTG 58431 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||||| |||| ||| | |||| ||||||||||| |||||| Sbjct 58432 ATTGGATGGAGCTGATATCGTTGCAGGGGAAGACCAACTTCTTCGAG 58478 >seq83 Length=394602 Score = 91.5 bits (100), Expect = 2e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | ||||| ||| ||| | || | Sbjct 382824 ATCTTCAAGGTGCTGAAGCAGGTCCACCCG-GA--CATTGGG--ATC-TCCGGCTAGGCG 382771 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||| |||||| || | |||||||| |||| ||| | |||||| Sbjct 382770 ATGGGGATAATGAACAGCTTCATTAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 382711 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| ||| ||| | | ||||||||||||||||||| Sbjct 382710 AGGCTCGCCAGGTACAACAAGAAGCCCACCATCACCTCCGGCGAGATCCAGACCGCCGTC 382651 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | | |||||| || |||| ||||||||||||||| || |||| Sbjct 382650 AGGCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAAGGTACCA 382599 >seq264 Length=208598 Score = 86.0 bits (94), Expect = 9e-11 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| | |||||||| |||||| || | | || ||| |||| |||| || Sbjct 190838 ATCTTCAAGGTCTTGAAGCAGGTCCACCCC-GA--CATCGGA--ATC-TCCAGCAAGGCC 190785 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| | |||||| Sbjct 190784 ATGGGAATCATGAACAGTTTCATCAACGACATATTCGAGAAGCTCGCCCAGGAGGCCTCA 190725 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| |||||| | | || ||||||||||||||||| Sbjct 190724 AGACTCGCAAGGTACAACAAGAAGCCGACGATCACCTCTCGGGAGATCCAGACCGCCGTC 190665 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| || | | ||| || || |||| ||| || || |||||||| |||| Sbjct 190664 AGGCTGGTCCTTCCCGGAGAGCTCGCCAAGCATGCGGTTTCCGAGGGGACCA 190613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175111030795190