Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1 251 8e-62 seq272 179 4e-40 seq257 178 1e-39 seq716 165 9e-36 seq168 102 9e-17 seq964 93.3 5e-14 seq30 82.4 9e-11 >seq1 Length=1764766 Score = 251 bits (278), Expect = 8e-62 Identities = 271/359 (75%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 160039 TTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCG 160098 ||| | || ||||||| ||||| |||||||| ||||| || || |||||||| ||||| Sbjct 983309 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCC 983250 Query 160099 CAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTG 160158 || ||||| || ||||| ||||| || || | ||| | ||||| || ||||| ||||| Sbjct 983249 CAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTA 983190 Query 160159 CCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGT 160218 || || | ||| |||||| || |||| | | ||||| ||||| || || ||| Sbjct 983189 CCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGT 983130 Query 160219 GCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTC 160278 || || || ||||| ||| || || | ||||| |||||||||||||||||||| | | Sbjct 983129 GCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGC 983070 Query 160279 TACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAA 160338 |||||||| || || || || || || || |||||||||||||||| || ||||| Sbjct 983069 TACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 983010 Query 160339 CCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACTGTGATT 160397 || |||||||||||||| ||||||||||| || ||| || | || ||||| || | ||| Sbjct 983009 CCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAATT 982951 >seq272 Length=206342 Score = 179 bits (198), Expect = 4e-40 Identities = 302/429 (70%), Gaps = 16/429 (4%) Strand=Plus/Minus Query 159595 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAA 159654 |||||| | | |||| |||| |||||| | ||| |||| || || ||||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 159655 CTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATG 159714 | | || | ||| | ||||||| ||| || || ||| || |||||||||| Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 159715 CTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTG---C 159770 |||| ||||||||| ||||||| ||| ||| | |||||| ||| ||| | Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGTATCCTTATAATATTATAATCAC 146895 Query 159771 GTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTC 159830 ||||| | ||| |||| |||||||| |||||| | || ||||| | | |||||| Sbjct 146894 ATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTC 146835 Query 159831 TTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATT---CCTGTTGTT 159887 | |||| ||| |||| ||||| | |||| ||| || || |||| ||| || || Sbjct 146834 T----GGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTT 146779 Query 159888 CCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 159947 || |||||||| | || |||| | ||||| || || ||||||||||||||||| | Sbjct 146778 CCA--AGGGTTTC-ATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT 146722 Query 159948 ACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGA 160007 | ||| || |||||| | ||||| |||||||| |||| ||||| || || || ||||| Sbjct 146721 ATTAG-TGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGA 146663 Query 160008 AGATGGAGA 160016 |||||| || Sbjct 146662 AGATGGTGA 146654 >seq257 Length=213233 Score = 178 bits (196), Expect = 1e-39 Identities = 253/353 (72%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 159760 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCA 159819 ||||| || || ||||| | ||| |||| ||||||||| |||||||| || |||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 159820 CTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC 159879 ||||||| | |||||||||||||| | ||| || |||||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 159880 ---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGA 159936 || || |||| ||||||| | || ||||| | ||| | || || ||||||||| Sbjct 14365 ATCCTATTTTTCCA--AGGGTTTT-ATAATTGGACATTGAACTCATTTCACATGATGGGA 14309 Query 159937 GTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAAC 159996 ||||| | || | |||| || || | ||||| || |||| |||| |||| || Sbjct 14308 GTTGCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAAT 14249 Query 159997 ACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAA 160056 || || |||||||||| || | ||| ||||| | ||| | || |||||| Sbjct 14248 ACCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACT 14189 Query 160057 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160109 ||| | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14188 GAATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq716 Length=92840 Score = 165 bits (182), Expect = 9e-36 Identities = 204/279 (73%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 158137 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158196 || ||||||||| || |||||| ||||||| |||| ||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 158197 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158256 | | |||||||||||||| || | |||| | ||||| ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 158257 TTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAAC 158316 ||| |||||| ||||| | || || || | | | |||| || |||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 158317 AGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGC 158376 || || || | ||||| | ||||||||||| ||||| ||||| || || || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 158377 AGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 158415 || ||||| || || || || |||||||||||||| || Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq168 Length=274740 Score = 102 bits (112), Expect = 9e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 158503 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 158562 |||||| || ||| | || ||||| || ||||| || | | ||||| || | ||||| Sbjct 245272 CATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCG 245331 Query 158563 TGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCA 158622 ||| | || |||| || || | | ||||| ||| ||||||||||||||||||||| Sbjct 245332 TGTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 245391 Query 158623 TGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158663 ||| ||||| || || |||||| | || || || || |||| Sbjct 245392 TGAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 >seq964 Length=67008 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 160085 ACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTT 160144 ||||||| ||||| || ||||| || |||| ||||| || || || ||| | ||||| | Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 160145 TCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTG 160204 | ||||| ||| | || || | ||| ||| || || |||| | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 160205 CTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTG 160264 |||| || | ||||| || || ||||| ||| || || |||| |||||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 160265 AATTTGAGA 160273 ||||||||| Sbjct 23599 AATTTGAGA 23607 >seq30 Length=616610 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 159694 TTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCG 159752 |||| || |||||||||||| |||| ||||||||| ||||||| ||| ||| | | Sbjct 535276 TTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGTG 535218 Query 159753 TCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTAT 159812 ||||| ||||| || || ||||||| || |||| ||||||||| ||||| || || Sbjct 535217 CCCTTATAATGCAATCGCATTCTCTGCACCAATTGTTGTTTTTGTTTATGTATTTCTGAT 535158 Query 159813 CTAT 159816 ||| Sbjct 535157 TTAT 535154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572823477414000