Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq716 161 1e-34 seq257 145 9e-30 seq168 132 5e-26 seq272 111 2e-19 seq2 89.7 6e-13 >seq1 Length=1764766 Score = 194 bits (214), Expect = 2e-44 Identities = 247/340 (73%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 162366 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 162425 ||||| |||||||| ||||| || || |||||||| ||||| || ||||| || |||| Sbjct 983291 GAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 983232 Query 162426 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 162485 ||||| || || | ||| | ||||| || ||||| ||||| || || | ||| ||||| Sbjct 983231 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 983172 Query 162486 ACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGT 162545 | || |||| | | ||||| ||| | || || ||||| || || ||||| | Sbjct 983171 ATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGACTTCGTTTCT 983112 Query 162546 CAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTG 162605 || || ||| | ||||| ||||||||||| ||||| || | |||||| || || ||||| Sbjct 983111 CAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAAAATATTCTC 983052 Query 162606 CTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATC 162665 | || || || | ||||| ||| | || || || || || ||||| |||||||| Sbjct 983051 TTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACTTTATA 982992 Query 162666 TTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 ||||| || || ||||| || | || ||||| ||||||| Sbjct 982991 TTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAAT 982952 >seq716 Length=92840 Score = 161 bits (178), Expect = 1e-34 Identities = 203/279 (73%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 160421 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 160480 || ||||||||| || |||||| ||||||| |||| ||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 160481 CAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTT 160540 | ||||||||||||| || || | ||| | || || ||||| |||||||| || || | Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 160541 GTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAAC 160600 ||| |||||| || || | || || || | | | |||| || |||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 160601 AGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGC 160660 || || || | ||||| | ||||||||||||||||| ||||| || || || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 160661 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGC 160699 || |||||||| || || || ||||||||||||||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 145 bits (160), Expect = 9e-30 Identities = 242/350 (69%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 162069 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCA 162128 ||||| || || ||||| | ||| |||| ||||||||| || ||||| || || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 162129 TTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTC 162188 | ||||||| ||||||| || || || ||||| || ||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 162189 CTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTT 162248 | | ||| | ||||| || |||| ||||| ||||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 162249 GCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACA 162308 || | || | |||| || | |||| ||||||||| | || | |||||||| Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 162309 TTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAA 162368 |||| || |||| || | ||| || || | ||| | | || || ||| Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 162369 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 162418 | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq168 Length=274740 Score = 132 bits (146), Expect = 5e-26 Identities = 150/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 160748 TGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 160807 |||||| || || ||||| ||| || | ||| |||||| |||||| || ||| | || || Sbjct 245234 TGTAGTAGGTATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGG 245292 Query 160808 TTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGA 160867 ||| || ||||| || | | | ||| || ||||||||||| | || |||| || | Sbjct 245293 TTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAA 245352 Query 160868 CGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 160927 | | || |||||| |||||||||||||||||||||||| ||||| || || ||||| Sbjct 245353 TATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 245412 Query 160928 CCCACTCGACCTCGCTGCTG 160947 | | || ||||| || |||| Sbjct 245413 CTCTCTAGACCTAGCGGCTG 245432 >seq272 Length=206342 Score = 111 bits (122), Expect = 2e-19 Identities = 280/415 (67%), Gaps = 18/415 (4%) Strand=Plus/Minus Query 161919 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGG 161978 || |||| |||||| || ||| | ||||| || ||| ||| | | || || ||| Sbjct 147058 CTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGG 146999 Query 161979 AATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAA 162038 | |||||| | || ||||| ||| ||||| || || | | ||||| |||||| Sbjct 146998 ACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACATTACGTCAATTTGAA 146939 Query 162039 CTGGCACG---TCTT-ATTGGTATCCGTCCCTACAATGCTATTG-CGTTCTCTGGTCCTA 162093 || || || | || | | |||||| | || || || | | ||||| | ||| | Sbjct 146938 CTTGCTCGATCTGTTCAATTGTATCCTTA--TAATATTATAATCACATTCTCCGCTCCAA 146881 Query 162094 TTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCG 162153 ||| |||||||| || ||| | || || || || | |||||| ||| |||| | Sbjct 146880 TTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTCTGGTT--TTTTACA 146823 Query 162154 CTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT---CCTGTTGTTTCTTCAAGGATTCC 162210 | | || ||| | || | ||| || || |||| ||| || |||| ||||| || | Sbjct 146822 CCCAGT--TTTAGCGTAGTAGCTATATTACGATTTACCCTCTT-TTTC--CAAGGGTTTC 146768 Query 162211 ATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCAC 162270 |||| |||| | ||||| || || ||||||||||||||||| || || ||| |||| Sbjct 146767 ATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTATTA-GTGTTGCAC 146709 Query 162271 TTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGA 162325 | |||| |||||| || || | | || || ||||| |||| || ||||| || Sbjct 146708 TGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGA 146654 >seq2 Length=1456787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/141 (74%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 160638 GAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATAT 160697 ||||| ||||| || || || || || |||||||| || || || ||||| ||||||||| Sbjct 1455407 GAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATAT 1455466 Query 160698 GCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGA 160757 || ||| | ||||| | ||||||||| | || || ||||||||||| || Sbjct 1455467 GCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGGT 1455519 Query 160758 ATCTGGTTCACTGCTCTTGGT 160778 || ||||| || ||| ||||| Sbjct 1455520 ATTTGGTTTACCGCTTTTGGT 1455540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559308208569000