Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 seq716 176 6e-39 seq257 122 1e-22 seq964 104 3e-17 seq272 104 3e-17 seq2 87.8 2e-12 >seq1 Length=1764766 Score = 224 bits (248), Expect = 1e-53 Identities = 256/344 (74%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 ||||| | || || || ||||| |||||||| || || || |||||||| |||||||| Sbjct 983300 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 983241 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| |||||| ||||||| || ||||||||||| ||||| || || | Sbjct 983240 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 983181 Query 183150 GGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 183209 ||| | ||| | | || |||| | | || || ||| | ||||| ||||| ||||| Sbjct 983180 GGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGAC 983121 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 || || |||||| || | ||||| ||||||||||| || ||||| | |||||| || Sbjct 983120 TTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAA 983061 Query 183270 AACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAA 183329 || || || | || || || | ||||||||| |||| || ||||| || |||||| Sbjct 983060 AATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 983001 Query 183330 AACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||||| || |||||||| || |||||| || | || ||||| || Sbjct 983000 AACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCT 982957 >seq716 Length=92840 Score = 176 bits (194), Expect = 6e-39 Identities = 204/275 (74%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505 ||||| || || |||||| |||| ||||||| ||| |||| || ||||| |||||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTC 181565 || || ||||| || || | ||||| ||||| || |||||||| || || || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 181566 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAG 181625 ||||| || || ||||| ||||| || ||| | | | | || || |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 181626 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCC 181685 || || | ||||||| ||||| ||||| ||||| || || || || || ||||| Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 181686 CACGGTTACTTTGGTCGCTTGATCTTCCAATATGC 181720 || ||||| ||||| || ||||||||||||||||| Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 122 bits (134), Expect = 1e-22 Identities = 241/354 (68%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 182742 AATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCT 182801 ||||| || || || || | ||| |||| ||| || || ||| ||||| || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 182802 TTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTC 182861 | || |||| |||||| || || || |||||||| || || || || | ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 182862 ---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGA 182918 || || |||| ||||||| | || |||||| | ||| | || || ||||||||| Sbjct 14365 ATCCTATTTTTCCA--AGGGTTTT-ATAATTGGACATTGAACTCATTTCACATGATGGGA 14309 Query 182919 GTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAAT 182978 ||||| | || |||||| || |||| ||||||| |||| || |||| ||| Sbjct 14308 GTTGCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAAT 14249 Query 182979 ACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAG 183038 ||||| | |||||||| || | ||| ||||| | || | | ||||| Sbjct 14248 ACCTTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACT 14189 Query 183039 GAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGG 183092 || | || ||||| |||||||| || || | |||||||| |||||||| ||| Sbjct 14188 GAATAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGGG 14135 >seq964 Length=67008 Score = 104 bits (114), Expect = 3e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 183069 CGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTT 183128 || |||||||| |||||||| ||||||| ||| |||||| |||||||| || |||||| Sbjct 23421 CGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCTTT 23480 Query 183129 ATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCT 183188 ||||| ||| | || || | ||| | | | | | || |||| | | || || ||| Sbjct 23481 ATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGGCT 23540 Query 183189 CTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAG 183248 | ||| | ||||| ||||| || || |||||| || |||| ||||||||||| Sbjct 23541 TTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTGAA 23600 Query 183249 TTCGAGA 183255 || |||| Sbjct 23601 TTTGAGA 23607 >seq272 Length=206342 Score = 104 bits (114), Expect = 3e-17 Identities = 285/429 (66%), Gaps = 16/429 (4%) Strand=Plus/Minus Query 182577 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 182636 |||||| | | |||| |||| |||||| | || | |||| || ||||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 182637 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 182696 | | || || |||| ||| || | ||| || || ||| || || ||||| | Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 182697 CTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCTTACAATGCGATTG---C 182752 | | ||||||||||||||||| ||| || | | ||||| ||| || | Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGTATCCTTATAATATTATAATCAC 146895 Query 182753 TTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTC 182812 || || | ||| |||| ||| || | ||| ||| | || ||||| || | ||||| Sbjct 146894 ATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTC 146835 Query 182813 CTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTT---CCTGTTGTT 182869 |||||||| | || ||| | || | || || || | || ||| || || Sbjct 146834 ----TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTT 146779 Query 182870 CCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 182929 || |||||||| | || |||| | | ||||| || || ||||||||||||||||| | Sbjct 146778 CCA--AGGGTTTC-ATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT 146722 Query 182930 ACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGA 182989 | | | || |||||||| ||||||||||||| | | ||||| ||||| || | ||| Sbjct 146721 ATTAG-TGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGA 146663 Query 182990 AGATGGAGA 182998 |||||| || Sbjct 146662 AGATGGTGA 146654 >seq2 Length=1456787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/135 (74%), Gaps = 7/135 (5%) Strand=Plus/Plus Query 181658 AGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATA 181717 |||||| || || || || || || || || ||||| ||||| || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 181718 TGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGG 181777 |||| ||| | ||||| | ||||||||| | || || ||||||||||| || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 181778 AATCTGGTTCACCGC 181792 || ||||| ||||| Sbjct 1455519 TATTTGGTTTACCGC 1455533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614402522253600