Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 seq257 147 3e-30 seq716 131 2e-25 seq272 98.7 1e-15 seq2 96.9 5e-15 seq964 86.0 9e-12 seq90 84.2 3e-11 >seq1 Length=1764766 Score = 188 bits (208), Expect = 1e-42 Identities = 241/332 (73%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 176529 GAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCG 176588 ||||| || ||||| |||||||| || |||||||| ||||| |||||||| |||||||| Sbjct 983291 GAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 983232 Query 176589 TTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGG 176648 ||| ||||| ||||| | || ||||||||||| ||||| || || | ||| | ||| Sbjct 983231 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 983172 Query 176649 GTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGC 176708 | | |||| | | || || ||| | ||||| ||||| ||||| || || Sbjct 983171 ATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGACTTCGTTTCT 983112 Query 176709 CAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTT 176768 ||||| || | ||||| ||||||||||| ||||| |||| |||||| || || || || Sbjct 983111 CAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAAAATATTCTC 983052 Query 176769 CTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTA 176828 | ||||| || | | || |||||||| || ||||| || ||||| ||| || Sbjct 983051 TTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACTTTATA 982992 Query 176829 TTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || || |||||| || | || ||||| Sbjct 982991 TTCCCTGAGGAGGTTCTATCTCGTGGAAACGC 982960 >seq257 Length=213233 Score = 147 bits (162), Expect = 3e-30 Identities = 243/351 (69%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 176232 AACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCA 176291 || || || |||||| | ||| || | ||| ||||| ||| || || | || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 176292 CTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTC 176351 |||||| | | ||||||||||| ||| |||||||| ||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 176352 CTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTT 176411 | | ||| | || || || | || |||||| ||||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 176412 GCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACC 176471 || | || | |||| || | |||| ||| || |||| | ||| | ||||||||| Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 176472 CTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAA 176531 ||| |||||||| || || || ||| || | || | | || || ||| Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 176532 GAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGG 176582 | || ||||| |||||||| || ||| |||| ||||| |||||||| ||| Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGGG 14135 >seq716 Length=92840 Score = 131 bits (144), Expect = 2e-25 Identities = 194/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||||| | || |||||| | || ||||||| ||| | || || ||||| || || | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052 ||| | |||||||| || | ||||| || || || ||||| ||||| || || | ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 175053 TCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAG 175112 || || |||||||| | || |||||| | | | | || || |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 175113 TCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCC 175172 || || | ||||||| ||||| ||||| ||||| |||||||| || || || || Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 175173 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 175207 ||||| || || || || |||||||||||||| || Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq272 Length=206342 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/186 (73%), Gaps = 7/186 (4%) Strand=Plus/Minus Query 176306 CTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATT---CCTATTGTTTCT 176362 |||||| ||| | ||| ||| | || | ||| || || |||| ||| || || | Sbjct 146835 CTGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTCCA 146776 Query 176363 TCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 176422 |||||||| | || |||| | | ||||| || || ||||||||||||||||| || | Sbjct 146775 --AGGGTTTC-ATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTATT 146719 Query 176423 AGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGA 176482 | ||| ||||| |||| ||| |||||||||| || || || ||||| ||| |||||| Sbjct 146718 A-GTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAGA 146660 Query 176483 TGGAGA 176488 ||| || Sbjct 146659 TGGTGA 146654 >seq2 Length=1456787 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/142 (75%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 175145 AGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATA 175204 |||||| |||||||| || || || || ||||| || || || || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 175205 CGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGG 175264 ||| ||| | || || | |||||||||||||| || ||||| || ||||| Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 175265 TATCTGGTTCACCGCACTTGGT 175286 ||| ||||| ||||| ||||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGGT 1455540 >seq964 Length=67008 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 176557 ACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCT 176616 ||||||| ||||| |||||||| ||||||| ||| ||||| |||||| | || |||| Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 176617 TTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTG 176676 ||||||| ||| | || || | ||| | | | | | |||| | | || || | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 176677 CTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTG 176736 || | ||| | ||||| ||||| || || ||||| || |||| |||||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 176737 AGTTTGA 176743 | ||||| Sbjct 23599 AATTTGA 23605 >seq90 Length=380041 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| | ||||| |||| || || |||||||| Sbjct 122825 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTATTTTATTGACCGCAACT 122884 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||||||| | | | | || ||||| || || || || || | ||| Sbjct 122885 -TCTGTATTTATTATCGCTTTCATTGCTACCCCTCCAGTAGATATTGATGGTATTCATGA 122943 Query 174614 ACCAGTAGCTGGTTCACT 174631 ||| || |||| || || Sbjct 122944 ACCTGTTTCTGGATCTCT 122961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729674170260600