Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq716 172 7e-38 seq257 113 5e-20 seq272 98.7 1e-15 seq2 84.2 3e-11 >seq716 Length=92840 Score = 172 bits (190), Expect = 7e-38 Identities = 203/275 (74%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373 ||||| || || |||||| |||| ||||||| ||| |||| || ||||| || ||| | Sbjct 34192 ATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCACTAT 34133 Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTC 178433 || || |||||||| || | ||||| ||||| || ||||||||||| || || || ||| Sbjct 34132 ATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 34073 Query 178434 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAA 178493 ||||| || || ||||| ||||| || ||| | | | |||| || |||| ||| Sbjct 34072 AGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAATGAA 34013 Query 178494 TCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCA 178553 || || | ||||| | ||||| ||||| ||||| || || || || || || || Sbjct 34012 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCT 33953 Query 178554 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGC 178588 ||||| || || || || ||||||||||||||||| Sbjct 33952 CATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 113 bits (124), Expect = 5e-20 Identities = 235/350 (67%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 179604 AATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCT 179663 ||||| || || || || | ||| |||| ||| || || ||| ||||| || ||||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 179664 TTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTC 179723 | || |||| |||||| || || || |||||||| || || || || | ||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 179724 TTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTT 179783 | || || | || || || | || ||||| | ||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 179784 GCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACA 179843 || | || | || | || |||| ||||||| |||| ||| |||| ||||| Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 179844 TTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAA 179903 || | |||||||| || | |||||| || | ||| | | || || ||| Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 179904 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 179953 | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 98.7 bits (108), Expect = 1e-15 Identities = 282/429 (66%), Gaps = 16/429 (4%) Strand=Plus/Minus Query 179439 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 179498 |||||| | | |||| |||| |||||| | || | |||| || ||||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 179499 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 179558 | | || || |||| ||| || | ||| || || ||| || || ||||| | Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 179559 CTTAGGCAATTTGAACTTGCTCG-CCTG---ATTGGTATCAGACCTTACAA---TGCGAT 179611 | | ||||||||||||||||| ||| | | |||| ||||| || | || Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTAT----CCTTATAATATTATAAT 146898 Query 179612 TGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACA 179671 | || || | ||| |||| ||| || | ||| ||| | || ||||| || | || Sbjct 146897 CACATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCA 146838 Query 179672 GTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTT 179731 ||| |||||||| | || ||| | || | || || || | || || || Sbjct 146837 GTC----TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTT 146782 Query 179732 CCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 179791 | || || || || || |||| | ||||| || || ||||||||||||||||| | Sbjct 146781 TTTCCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT 146722 Query 179792 ACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGA 179851 | || | | |||||||| ||||||||||||| | || ||||| ||||| || | ||| Sbjct 146721 ATTA-GTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGA 146663 Query 179852 AGATGGAGA 179860 |||||| || Sbjct 146662 AGATGGTGA 146654 >seq2 Length=1456787 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/135 (73%), Gaps = 7/135 (5%) Strand=Plus/Plus Query 178526 AGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 178585 |||||| || || || || || || || ||||| || || || || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 178586 TGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGG 178645 |||| ||| | ||||| | ||||||||| | || || ||||||||||| || Sbjct 1455466 TGCTAGTTTC-------CTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 178646 AATCTGGTTCACCGC 178660 || ||||| ||||| Sbjct 1455519 TATTTGGTTTACCGC 1455533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605797534515600