Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq716 179 4e-40 seq257 136 4e-27 seq272 125 8e-24 seq168 102 9e-17 >seq1 Length=1764766 Score = 194 bits (214), Expect = 2e-44 Identities = 247/340 (73%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| ||||| || || |||||||| ||||| || ||||| || |||| Sbjct 983291 GAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 983232 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGG 160696 ||||| || || | ||| | ||||| || ||||| ||||| || || | ||| | ||| Sbjct 983231 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 983172 Query 160697 ACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGT 160756 | | |||| | | ||||| ||| | ||||| ||||| || || ||||| | Sbjct 983171 ATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACGTGCCTATGACTTCGTTTCT 983112 Query 160757 CAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTA 160816 ||||| || | ||||| |||||||| ||||||||||| | ||||||||| || || || Sbjct 983111 CAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTGCTACACCAAAAATATTCTC 983052 Query 160817 CTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATC 160876 | || || || | ||||| ||| | || || || || || ||||| |||||||| Sbjct 983051 TTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACTTTATA 982992 Query 160877 TTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 ||||| || || ||||| || | || ||||| ||||||| Sbjct 982991 TTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAAT 982952 >seq716 Length=92840 Score = 179 bits (198), Expect = 4e-40 Identities = 207/279 (74%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 158840 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158899 || ||||||||| || |||||| ||||||| |||| ||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 158900 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158959 | | |||||||||||||| || | |||| | ||||| ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 158960 TTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAAC 159019 ||| |||||| ||||| | || || || | | | |||| || |||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 159020 AGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGC 159079 || || || | ||||||| ||||| ||||| |||||||| |||||||| || || Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 159080 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGC 159118 || |||||||| || || || |||||||||||||| || Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 136 bits (150), Expect = 4e-27 Identities = 240/350 (69%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 160280 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCA 160339 ||||| || || ||||| | ||| |||| ||| ||||| |||||||| || || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 160340 TTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTC 160399 | ||||||| ||||||| || || || ||||| || ||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 160400 CTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTT 160459 | | || | ||||| ||| | || ||||| | ||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 160460 GCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACA 160519 || | || | || | || |||| |||| || |||| | ||| |||| || || Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 160520 CTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAA 160579 | | |||||||| || | |||||| || | ||| | | || || ||| Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 160580 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160629 | |||||||| ||||| || || ||| |||| ||||| || ||||| || Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 125 bits (138), Expect = 8e-24 Identities = 281/414 (68%), Gaps = 16/414 (4%) Strand=Plus/Minus Query 160130 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 160189 || |||| |||||| || ||| | ||||| | ||| ||| | | || || ||| Sbjct 147058 CTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAAATAAGTGGTCTGTGG 146999 Query 160190 AATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAA 160249 | |||||| | || ||||| ||| ||||| || || | | ||||| |||||| Sbjct 146998 ACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACATTACGTCAATTTGAA 146939 Query 160250 CTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTG---CGTTCTCTGGTCCTAT 160305 || || || ||| || | | |||||| ||| ||| | ||||| | ||| || Sbjct 146938 CTTGCTCGATCTGTTCAAT-TGTATCCTTATAATATTATAATCACATTCTCCGCTCCAAT 146880 Query 160306 TGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGC 160365 || ||| |||| |||||| | || || || || | |||||| ||| |||| | | Sbjct 146879 TGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCAGTCTGGTT--TTTTACAC 146822 Query 160366 TCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT---CCTGTTGTTCCTTCAAGGATTTCA 160422 | || ||| | || | ||| || || |||| ||| || |||| |||| ||||| Sbjct 146821 CCAGT--TTTAGCGTAGTAGCTATATTACGATTTACCCTCTTTTTCC---AAGGGTTTCA 146767 Query 160423 CAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACT 160482 || |||| ||||||| || || ||||||||||||||||| || || | | ||||| Sbjct 146766 TAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGTATTA-GTGTTGCACT 146708 Query 160483 GCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGA 160536 ||| |||| |||||||||| || ||||| || || | | ||||||||| || Sbjct 146707 GCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGAAGATGGTGA 146654 >seq168 Length=274740 Score = 102 bits (112), Expect = 9e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 159206 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 159265 |||||| || ||| | || ||||| || ||||| || | | ||||| || | ||||| Sbjct 245272 CATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCG 245331 Query 159266 TGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCA 159325 ||| | || |||| || || | | |||||||| ||| ||||||||||||||||| Sbjct 245332 TGTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 245391 Query 159326 TGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 159366 ||| ||||| || || |||||| | || ||||| || |||| Sbjct 245392 TGAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552280268769600