Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq716 168 8e-37 seq257 145 9e-30 seq272 116 5e-21 seq2 89.7 6e-13 seq168 87.8 2e-12 seq964 84.2 3e-11 >seq1 Length=1764766 Score = 205 bits (226), Expect = 1e-47 Identities = 256/351 (73%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 180680 ATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTC 180739 |||| | |||| |||| || |||||||| || ||||| || || |||||||| ||||| Sbjct 983310 ATTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 983251 Query 180740 GCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 180799 || ||||| || |||| ||||| || || | ||| | ||||| || ||||| ||||| Sbjct 983250 CCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 983191 Query 180800 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 180859 || || | ||| |||||| || |||| | | ||||| ||| | || || || Sbjct 983190 ACCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACG 983131 Query 180860 TGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTT 180919 ||| || || ||||| |||||| ||| | ||||| ||||||||||| || ||||| | Sbjct 983130 TGCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTG 983071 Query 180920 CTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCA 180979 ||||||||| || || || || || || || | ||||| ||| |||| || ||||| Sbjct 983070 CTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 983011 Query 180980 ACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || || |||||||| || |||||||| || |||||| | | || ||||| Sbjct 983010 GCCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGC 982960 >seq716 Length=92840 Score = 168 bits (186), Expect = 8e-37 Identities = 207/280 (74%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 179322 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 179381 || ||||||||| || |||||| ||||||| |||| ||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 179382 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 179441 | | |||||||||||||| || | |||| | ||||| ||||| |||||||| || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 179442 TTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAACAACTGAGA 179500 ||| |||||| || || | || || | || | ||| | | |||| || || | Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCT-CTAGTTTGATAAGGAAAACCACAGAAA 34018 Query 179501 CAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCG 179560 || || || | ||||| | ||||| ||||| ||||| |||||||| || || | Sbjct 34017 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAG 33958 Query 179561 CAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGC 179600 | || ||||| || || || || ||||||||||||||||| Sbjct 33957 CCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq257 Length=213233 Score = 145 bits (160), Expect = 9e-30 Identities = 242/350 (69%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 180402 AATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCA 180461 ||||| || |||||||| | ||| || | ||| ||||| ||||| || || || ||| Sbjct 14485 AATGCAATCGCATTCTCCGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTGATTTATCCA 14426 Query 180462 CTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTC 180521 ||||||| ||||||||||||| ||| |||||| |||||||| || ||| ||||| Sbjct 14425 TAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGTAGCAGCTATATTTCGATTC 14366 Query 180522 CTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTT 180581 | || ||| | || || || | || ||||| | ||| | || || |||||||||||| Sbjct 14365 ATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTCATTTCACATGATGGGAGTT 14306 Query 180582 GCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACA 180641 || | || | |||| || |||||| || || |||| | || | || || || Sbjct 14305 GCCGAGGTATTGGGTGCTGCTATGCTATGTGCTATTCATGACACTACCATAGAAAATACC 14246 Query 180642 CTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAG 180701 | | |||||||| || | ||| || || | ||| | |||| ||| || Sbjct 14245 TTATTTGAAGATGATGATGGTGTAAATACATTCCCTACTTTTAACCCAACTCAAACTGAA 14186 Query 180702 GAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 180751 ||||||| || ||||| || || ||| |||| ||||| || ||||| || Sbjct 14185 TAAACTTATTCAATGGTTACCGCTAACTGCTTTTGGTCCCAAATCTTTGG 14136 >seq272 Length=206342 Score = 116 bits (128), Expect = 5e-21 Identities = 286/429 (67%), Gaps = 16/429 (4%) Strand=Plus/Minus Query 180237 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAA 180296 |||||| | | |||| |||| |||||| | || | |||| || ||||| ||| Sbjct 147073 CATTCTTTAATGTTACTATGGGATCCTGAAGCACAATGCGATTTTACTCGTTGGTGTCAA 147014 Query 180297 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATG 180356 | | || || |||| ||| || | ||| || || ||| ||||| || |||| Sbjct 147013 ATAAGTGGTCTGTGGACTTTTGTTGTTCTTCATGGCATTTTCAAACTAATAGGTTTTACA 146954 Query 180357 CTACGCCAGTTTGAACTGGCACG---TCTT-ATTGGTATCCGTCCTTACAATGCTATTG- 180411 |||| || |||||||| || || | || | | |||||| ||| ||| ||| Sbjct 146953 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGTATCC----TTATAATATTATAAT 146898 Query 180412 --CATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 ||||||| | ||| || | ||| |||| ||||| | || || || | | ||| Sbjct 146897 CACATTCTCCGCTCCAATTGTTGTTTTTGGTTCTGTATTCTTGATTTATCCGTTAGTTCA 146838 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 ||| ||||| ||| | ||| |||| | |||| ||| || || |||| ||||| Sbjct 146837 GTC----TGGTTTTTTACACCCAGTTTTAGCGTAGTAGCTATATTACGATTTACCCTCTT 146782 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 180589 | | || || || || || |||| | ||||| || || ||||||||||||||||| | Sbjct 146781 TTTCCAAGGGTTTCATAATTGGAAATTTAACCCATTTCACATGATGGGAGTTGCTGGGGT 146722 Query 180590 ACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGA 180649 | || ||| ||| |||||| || |||||||||| | || || || || | | ||| Sbjct 146721 ATTA-GTGTTGCACTGCTATGTGCTATCCATGGCGCTATCGTAGACAATACTTTATTTGA 146663 Query 180650 AGATGGAGA 180658 |||||| || Sbjct 146662 AGATGGTGA 146654 >seq2 Length=1456787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/141 (74%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 179538 AGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 179597 |||||| |||||||| || || || || ||||| || || || || ||||| |||||||| Sbjct 1455406 AGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTCCAATA 1455465 Query 179598 TGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGG 179657 ||| | ||| | || ||||| ||||||||| | ||||| ||||| || || || Sbjct 1455466 TGC-TAGTTT------CCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGG 1455518 Query 179658 CATCTGGTTCACTGCTCTTGG 179678 || ||||| || ||| |||| Sbjct 1455519 TATTTGGTTTACCGCTTTTGG 1455539 >seq168 Length=274740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 179688 CATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACG 179747 |||||| || ||| | || ||||| || ||||| || | | |||| || |||| || Sbjct 245272 CATGGCTTTTAACTTAAATGGTTTTAATTTCAATCAATTTGTAGTTGATAGTTAAGGTCG 245331 Query 179748 TGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 179807 ||| |||| || | || | | | |||||||| | | ||||||||||||||||| Sbjct 245332 TGTAATTAATACCTAGGTTAATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 245391 Query 179808 TGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 179848 ||| ||||| || || |||||| | || ||||| || |||| Sbjct 245392 TGAACGTAATGCTCATAACTTCTCTCTAGACCTAGCGGCTG 245432 >seq964 Length=67008 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 180727 ACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTT 180786 ||||||| ||||| || ||||| || ||| ||||| || || || ||| | ||||| | Sbjct 23419 ACCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTTCCAATAAACGTTGGTTACATTTCT 23478 Query 180787 TCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTG 180846 | ||||| ||| | || || | ||| ||| || || |||| | | ||||| | Sbjct 23479 TTATGTTATTTATACCAGTAACTGGTTTATAGATGAGTGCTCTTGGAGTAGTCGGTCTGG 23538 Query 180847 CTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTG 180906 || | || | ||||| || || ||||| |||||| ||| |||| |||||||||| Sbjct 23539 CTTTGAATTTACGTGCCTATGACTTCGTTTCTCAAGAAATCCATTCAGCGGAAGATCCTG 23598 Query 180907 AGTTCGAGA 180915 | || |||| Sbjct 23599 AATTTGAGA 23607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610116022785600