Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 4e-14 seq168 86.0 5e-12 >seq19 Length=713669 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||| ||| Sbjct 628706 GCCGCCGCGAAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 628765 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || ||||||||||||| || || ||| | || |||||||| || |||||||| Sbjct 628766 GAGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 628825 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||||||| || | | | || | ||||| | | || || Sbjct 628826 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 628885 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| | ||||| || || ||||| || ||||| |||||| Sbjct 628886 CTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATA 628934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || |||||||| | | |||| |||| || |||||||| |||||| | Sbjct 623098 TCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAG 623157 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || | ||| || ||||| || | ||| || || || ||||||| ||||| | | Sbjct 623158 ATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTG 623217 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | | || || || || || || | ||||| || || ||||||||| Sbjct 623218 TCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACA 623277 Query 27237 AAGATTTGCAT 27247 || || ||||| Sbjct 623278 AAAATCTGCAT 623288 >seq168 Length=274740 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| | || || || || || || ||||||||| Sbjct 146614 CCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 146673 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| |||| |||||||| || ||||| | ||||| | ||| || || || || Sbjct 146674 AGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 146733 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||| ||| || | | | || | ||||| | | ||||| Sbjct 146734 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACC 146793 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| || || || || || || ||||||||||| Sbjct 146794 TCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| | | | || |||| || Sbjct 146860 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTCA 146919 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | || || | ||| || ||||| || | |||||| || || Sbjct 146920 AGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGA 146979 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | ||||| | | ||| || || || || || | ||| Sbjct 146980 ATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTG 147039 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||| ||||| ||||| Sbjct 147040 CCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424789417030440