Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1347 89.7 6e-13 seq143 87.8 2e-12 seq84 84.2 3e-11 >seq1347 Length=37354 Score = 89.7 bits (98), Expect = 6e-13 Identities = 264/405 (65%), Gaps = 14/405 (3%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || |||||||| | || ||||| | | ||||| || ||||| || || | Sbjct 26532 TTAGTCGCAGCAATAACAATGATACCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 26591 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC 11620 | || |||| || |||||||| ||||| ||| | ||||||| || | || | Sbjct 26592 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCC------ACCACCAATACCG-GTACC 26644 Query 11621 T---TG----CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 11673 | || || || |||||||| ||||||| || ||||| || || ||| || Sbjct 26645 TCTCTGTCGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTT 26704 Query 11674 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || ||| || ||||| || || | ||||| || ||||||||||| || ||||| Sbjct 26705 AGCCTTTTTGAAAAGATCACGCACTCGAGAAGCACCAACTCCAACAAACATTTCAACAAA 26764 Query 11734 GTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | | | ||| || ||||| ||| | |||||| || || || ||| || Sbjct 26765 CTCAGAACCTGAGATAGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAG 26824 Query 11794 GAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||||||||| || || || ||| | ||||| | || || || || || Sbjct 26825 CAGGGTCTTTCCAGTCCCAGGAGGACCAACAAGAAGAACTCCCTTAGGAATACGAGCCCC 26884 Query 11854 ACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 | || || | |||||||||| ||| | ||| ||||| | ||| Sbjct 26885 AATTGCAGTGAACCTCTCGGGTTTCTTCAAAAACTCCACCACCTC 26929 >seq143 Length=298601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| || || | || || |||||| || || ||||| | || |||||| Sbjct 58189 CCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCGGCATCAACCCGCGCTTC 58130 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || |||||||| |||||||||||||| || || || || || || Sbjct 58129 TTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAAG 58070 Query 122797 GCAAAAAGGCGTTCGGCGAAGGA 122819 || | ||||| ||||||||||| Sbjct 58069 GCGATGAGGCGCTCGGCGAAGGA 58047 >seq84 Length=393081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/176 (72%), Gaps = 10/176 (6%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCA-CAAT--GCCAGTCTCATTGTC 11538 |||||| || || ||||||||| || ||||| || | || | || | || || | Sbjct 157832 ATCAAGAATTTCAGGGCGATTAGTAGCTGCAATGACAATCACTCCGCTATTCCCACT--- 157776 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || || || ||||| | || ||||| |||||||||||| || Sbjct 157775 AAATCCATCCATTTCAGTAAGCAACTGATTCAAAGTCTGTTCCCTCTCATCATTTCCT-- 157718 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 | | | | |||| | | ||| | ||||| |||||||||||||||||||| || Sbjct 157717 CCTCCAATGCCAGTCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACAC 157662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627812228052000