Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq143 102 1e-16 seq113 89.7 6e-13 >seq143 Length=298601 Score = 102 bits (112), Expect = 1e-16 Identities = 375/571 (66%), Gaps = 25/571 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 || || || |||| ||||||||||||||| |||||||| | ||| ||||| ||||| Sbjct 58495 TACTCACCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAAC--GATATCAGCTCCA 58438 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTC---CAAATTGCTGGCACTCCAATCTGTTTGAGGA 129842 | ||||||| ||||||| | | | || || | | ||| || | | || | Sbjct 58437 TCCAATCAAACGGGTTCTGC-ACTCCGTACACCTTCCCG-CAC-CCTAGCGCACCCAGAA 58381 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATC--TTCTCGGAGTTCATACCGATGAG 129900 | ||||| | ||| | || ||||||| |||| ||| ||| ||||| || | | Sbjct 58380 GCCGATCGGCGACAAATTCGATGTACTGGCTCATCAGTTCCCGG--TTCATCCCCACCAA 58323 Query 129901 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT 129960 || || |||||||| | | ||| || |||| || ||||| || || || ||||| Sbjct 58322 CGCGCACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGAT 58263 Query 129961 GGCGTGAATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGA--AGAGTTC-CACGG 130016 | | | |||| || ||| | | || | || || ||| | || |||| Sbjct 58262 CCCCTTGACCCGCTCCTCGCTCAGCT-TCTTCCTCA--GTAGTGAGTACAGAAGGCACGC 58206 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 ||| || ||| | |||||||| || ||||| | || || |||||| || || | Sbjct 58205 GAAA-TCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCG 58147 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 |||| | || |||||||| | |||||| || || || || || ||||||||||||| Sbjct 58146 GCATCAACCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCC 58087 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACC 130196 | || || || ||||| || | ||| ||||| || ||||| ||| || | || Sbjct 58086 CTTCGACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGA---GCCGTCGATCC 58030 Query 130197 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 130256 | | |||||||| ||||| ||| ||| || ||||| || | ||| || |||| Sbjct 58029 AGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCGGAAGA 57970 Query 130257 GTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 | |||| || | | ||| |||||||| Sbjct 57969 GGCGGCTCTTCTCGGCGGAATCCTTGATGTA 57939 >seq113 Length=343576 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| || |||||||| |||||||| || || || || || || | ||||||||| | Sbjct 221179 AAACCCGTCCATCTCCGTCAAGAGCTGGTTAATAGTCTGCTCTCTCTCATCATTCCCT-- 221122 Query 14212 CATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | || || | | ||| | || ||||| ||||| ||||| ||||| || ||| Sbjct 221121 CCTCCAAGCCCAGCTCCTCTCTGCCTCCCAACGGCATCAATCTCATCAATGAACACAATA 221062 Query 14270 CATGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | ||||||| || || || || Sbjct 221061 CACGGC-GCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTCGACGCCCCAACTCC 221003 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| |||||| || | | || | ||| || ||| || || || ||| || Sbjct 221002 CACAAACAACTCCACGAACTCCGAAGCCGCACACGAGAAGAACGGCACTCCAGCTTCTCC 220943 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | ||| ||||| | ||||||||||| || || || Sbjct 220942 GGCCACGGCCCGGGCCAAAAGGGTCTTCCCGGTACCGGG 220904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618218786332200