Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq143 114 2e-20 seq113 113 5e-20 seq1347 100 3e-16 >seq143 Length=298601 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || || || || ||||||||||| || | Sbjct 58047 TCCTTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 58106 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||||| |||||||| || | ||||| || ||| |||||||||| Sbjct 58107 TTCTGCGCCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAAC 58166 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||| | ||||| || |||||||| Sbjct 58167 GAGTTGATCTCGCGAGACGAGGG 58189 >seq113 Length=343576 Score = 113 bits (124), Expect = 5e-20 Identities = 259/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || |||||||| ||||| || ||||||||||| || || | ||||||||| || Sbjct 221179 AAACCCGTCCATCTCCGTCAAGAGCTGGTTAATAGTCTGCTCTCTCTCATCATTCCCT-- 221122 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | ||||| | | ||| | || ||||||||||||||||||||||| || || Sbjct 221121 CCTCCAAGCCCAGCTCCTCTCTGCCTCCCAACGGCATCAATCTCATCAATGAACACAATA 221062 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC--AC 9786 || || ||||| || || || || | ||||| ||| || | ||||| || Sbjct 221061 CACGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCC--TCACTCTCGACGCCCCAAC 221006 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || ||||||| |||||| || | | || | ||| || ||| || || || ||| Sbjct 221005 TCCCACAAACAACTCCACGAACTCCGAAGCCGCACACGAGAAGAACGGCACTCCAGCTTC 220946 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | ||| ||||| | ||| ||||| || ||||| ||| ||| | || || Sbjct 220945 TCCGGCCACGGCCCGGGCCAAAAGGGTCTTCCCGGTACCGGGCGGGCCCACAAGAAGACA 220886 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| || || || || || | ||| | || || | ||| | |||||||| Sbjct 220885 CCCTTTGGGGATTTTAGCTCCCAGAGCCGTGTACTTATCCGGGTTCTTCAAGAAATCCAC 220826 Query 9967 AATTTCTTCCAATTCATCTTTGGC 9990 || ||||| |||||| ||||| Sbjct 220825 AACTTCTTGTAATTCAAGCTTGGC 220802 >seq1347 Length=37354 Score = 100 bits (110), Expect = 3e-16 Identities = 263/396 (66%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || ||||| || || |||| ||||| || | | |||||||| ||||| ||||| ||| Sbjct 26532 TTAGTCGCAGCAATAACAATGATACCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 26591 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCA-TACCACCAGCACTGCGT 9691 || ||||||| || ||||| | |||||| || | | || |||| | | || || Sbjct 26592 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCACCACCAATACCGGTACCTCTCTGT 26651 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 | ||| || |||||||| ||||||| || || ||||| || ||| || ||| Sbjct 26652 CG---TCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTAGCC 26708 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 || || ||||| || || || || || || ||||||||||| || ||||| | Sbjct 26709 TTTTTGAAAAGATCACGCACTCGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCA 26768 Query 9812 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | | | | || | || || || ||| || |||||| ||||| || ||| || || Sbjct 26769 GAACCTG-AGATAGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTGGCTAGCAG 26827 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACT 9930 ||||| || || || || ||| | || || | || ||||| || ||| | Sbjct 26828 GGTCTTTCCAGTCCCAGGAGGACCAACAAGAAGAACTCCCTTAGGAATACGAGCCCCAAT 26887 Query 9931 TCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | || | | ||||| |||| ||| | ||| ||||| Sbjct 26888 TGCAGTGAACCTCTCGGGTTTCTTCAAAAACTCCAC 26923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583056695173800