Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq143 172 6e-38 >seq143 Length=298601 Score = 172 bits (190), Expect = 6e-38 Identities = 595/907 (66%), Gaps = 36/907 (4%) Strand=Plus/Plus Query 59530 TTCTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGG 59589 ||||||| |||| | ||| || ||| | || || || | ||||||||| | |||| Sbjct 57607 TTCTCGCCCCGAACCCCGACCGGTTCTGCATGTTCCCGATCCAGTACCCGGAGATCTGGG 57666 Query 59590 CCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCC--GG 59647 |||| ||||| || | || || ||| ||| ||||||| | |||||| || || Sbjct 57667 AGATGTACAAGAAGGCCGAGGCCTCGTTTTGGACCGCCGAGGAGGTCGACCTCTCCCAGG 57726 Query 59648 AGACCTGAAGGATTGGGACAAGC--TCAATTACGACGAGCAGCATTTCATCAAGATGGTC 59705 | | | | | | | |||| ||| ||||||| |||| ||||||| ||| Sbjct 57727 ACATCCGCCAGTTCG----AAGCCCTCACCCCCGACGAGAAGCACTTCATCACCCACGTC 57782 Query 59706 CTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC 59765 || ||||||||||| || || || || || | || ||| | | | || Sbjct 57783 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTAGAGAATCTCGCCGGTGGGTTCATG 57842 Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTC 59824 ||||| |||||| | || ||||| || | ||||||| | ||| ||| || |||| Sbjct 57843 AAGGAGGTCCAGGTCGCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGC-CATCGAGAA 57901 Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884 ||||||||||| | |||| ||| | |||| | | |||||||| | | ||||| Sbjct 57902 CATCCACTCCGAAATGTACAGCCTCCTCCTCGAGACCTACATCAAGGATTCCGCCGAGAA 57961 Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 | | || ||||| ||||| || || ||||| || || | || || | |||| Sbjct 57962 GAGCCGCCTCTTCCGCGCCATCGACACTGTCCCTTGC-GTCGCGAAGAAGGCCCAGTGGG 58020 Query 59944 CCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATG 60001 || | | ||||| || || ||| || || || | || ||||| || || || || Sbjct 58021 CCCTCCGCTGGATCGACGGCTCCGAG--TCCTTCGCCGAGCGCCTCATCGCCTTCGCCTG 58078 Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| ||||| ||||||||||| || ||||| || || |||||||| || ||||| || Sbjct 58079 CGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTAAAGAAGCGCGG 58138 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCA 60121 | |||||||| || | |||||||||||| |||| || || ||||||||| | || Sbjct 58139 GTTGATGCCGGGACTCACCTTCTCCAACGAGTTGATCTCGCGAGACGAGGGCTTGCACTG 58198 Query 60122 GGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATATTC 60180 || || || ||| | || || |||| || |||| || | | |||| Sbjct 58199 CGATTTCGC-GTGCCTTCTGTACTCACTACT-GAGGAAGAA--GCTGAGCGAGGAGCGGG 58254 Query 60181 ACAA---GATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTT 60236 ||| ||| | || | | ||| || | ||||| ||||| | || ||||| Sbjct 58255 TCAAGGGGATCG-TCCGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTG 58313 Query 60237 CCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCG 60296 || ||| | | || ||| || | | |||| |||||||| | |||||||| Sbjct 58314 CCGTGCGCGTTGGTGGGGATGAACCGGGAACTGATGAGCCAGTACATCGAATTTGTCGCC 58373 Query 60297 GACCGCCTCATGG----CCCAGTTTG-GAGAAGGACCAATTTACGGCGTGAATAACCCTT 60351 || || || ||| | || || | ||||| | ||||| ||| | ||||| | Sbjct 58374 GATCGGCTTCTGGGTGCGCTAGGGTGCGGGAAGG-----TGTACGGAGTGCAGAACCCGT 58428 Query 60352 TCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCG 60411 | || ||||||||| || |||||| | ||||||||||||||||| |||||| |||||| Sbjct 58429 TTGATTGGATGGAGCTGATATCGTTGCAGGGGAAGACCAACTTCTTCGAGAAGAGGGTCG 58488 Query 60412 GGGATTA 60418 | || || Sbjct 58489 GTGAGTA 58495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548332850602800