Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq143 176 5e-39 seq175 95.1 1e-14 seq123 87.8 2e-12 seq738 84.2 2e-11 seq361 84.2 2e-11 seq489 82.4 8e-11 >seq143 Length=298601 Score = 176 bits (194), Expect = 5e-39 Identities = 506/763 (66%), Gaps = 28/763 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||||| ||| || || |||||||||||||| | |||||| || ||||||| Sbjct 58495 TACTCACCGACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGATATCAGCTCCATC 58436 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || || || ||||||| | ||||| | |||| | ||| | | ||| || Sbjct 58435 CAATCAAACGGGTTCTGCACTCCGTACAC---CTTCCCGCACCCTAGCGCACCCAGAAGC 58379 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 ||||| || ||||||| |||||||| |||| | || | ||| || | | | Sbjct 58378 CGATCGGCGACAAATTCGATGTACTGGCTCATCAGTTCCCGGTTCATCCCCACCAACGCG 58319 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC--- 74696 |||||||| || ||| | |||||| ||||| | ||| || |||| ||| Sbjct 58318 CACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCGGACGATCCCC 58259 Query 74697 TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 ||| || | | | ||| | |||||| | ||||| || | |||| ||| Sbjct 58258 TTGACCCGCTCCTCGCTCAG---CTTCTTCCTCAGTAGTGAGTACAGAAGGCACGCGAAA 58202 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 | | ||| |||| || |||| ||||| || || || || | || || ||||| Sbjct 58201 TCGCAG-TGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGTCCCGGCAT 58143 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 | || |||||||| | ||| |||||||| |||||| || ||||||||| ||||| Sbjct 58142 CAACCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTC 58083 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGT 74932 ||| || || ||||||| ||||| | ||||| | ||||| ||| ||||| Sbjct 58082 GACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGAC---TCGGAGCCGTCGATCCAGCG 58026 Query 74933 CTGAGCCCATTCAGCTTT--TCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 | ||||| | || || ||| ||| ||||||||| ||||| || |||||||| Sbjct 58025 GAGGGCCCACTGGGCCTTCTTCGC--GACGCAAGGGACAGTGTCGATGGCGCGGAAGAGG 57968 Query 74991 CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAA 75050 | |||||| ||| |||||||| | | || | | || |||| | || || Sbjct 57967 CGGCTCTTCTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACATTTCGGAG 57908 Query 75051 TGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTAC 75109 || || |||| || ||| |||| | ||||||| | |||||||| || | ||| || Sbjct 57907 TGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGCGACCTGGAC 57849 Query 75110 ATCCTTTGAAAAATTCAT-GTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168 ||||| | || || | ||| |||||| | |||||||||||| ||||||||||| | Sbjct 57848 CTCCTTC-ATGAACCCACCGGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCGAAGA 57790 Query 75169 AAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 | || || || |||| ||||| ||| ||| ||||| Sbjct 57789 AGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAG 57747 >seq175 Length=268746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 281/427 (66%), Gaps = 20/427 (5%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||||||||| | ||||| | |||||| ||| ||||| | | || | || || Sbjct 130802 CGCCACCTCCAGGAACTCCTCCACCGTGTGCGACTCCTCCGTGGCGACGACATAGTCATC 130861 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| || |||||||| ||| | |||||| || | ||| || ||| | ||| ||||| Sbjct 130862 GGGCTTCTCCTGCTGCAGCATCATCCACATTGCCTCGACATAATCCCCCGCGAAACCCCA 130921 Query 124601 GTCGCGCTTGGCATCCAGGTTTCC------GAGCTCGATTGGCTTG--GCCG--TCTTGT 124650 ||| | | || | || || || ||||| ||| ||| ||| ||||| Sbjct 130922 GTCCCTCGAAGCCTGCAAATTCCCCAAAAAGAGCTT-ATT---TTGAAGCCCAATCTTGA 130977 Query 124651 TCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAG 124710 ||| | || || | |||| ||||| | |||||| || | || || ||| | Sbjct 130978 TCCTCCCCACCGCTCT-AGTG--ATCTTCCTCGTCACGAAATTCTCTCCTCGCCGCGGCG 131034 Query 124711 ACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTT 124770 ||||||||||||||||||| ||| | || || || |||||||||| ||| ||||| || Sbjct 131035 ACTCGTGGTTGAACAGAATTCCATTGCAGGCGAAGATCCCGTACGCCTCACGGTAATTAA 131094 Query 124771 TCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 || ||||| | || | ||||||||| | || ||| ||| || | ||| || | Sbjct 131095 CAGTGTACCAATGCGCAGCGCATTTGGACACGGCGTAAGGGGATCGCGGATGGAACGGCG 131154 Query 124831 TGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGAT 124890 | |||| | || || || | || || ||||||||||| | || ||||| | Sbjct 131155 TCGTTTCGTCCTG---CGGCGGCGGGGTCGATCCGAACATCTCCGATGACCCGGCCTGGT 131211 Query 124891 AGAATTT 124897 || |||| Sbjct 131212 AGTATTT 131218 >seq123 Length=326313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||| ||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 42341 AGATTGCTCTCGTTGAGAATCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 42400 Query 79680 CAATTGAGCTACGAAAGCAA 79699 ||| |||||||||| ||||| Sbjct 42401 CAACTGAGCTACGAGAGCAA 42420 >seq738 Length=89627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 13008 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 13067 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 13068 TGAGCTACGAGAGCAA 13083 >seq361 Length=171384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 145326 AGATTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 145385 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 145386 CAACTGAGCTATGAAAGC 145403 >seq489 Length=135672 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||||||| |||| | || ||| ||||| ||||||||||||||||||||| ||| Sbjct 3363 GAATGCTTTCGTTGAGAGTCGAATTCAAGACCTCTCGCTTACTAAACGGGTGCTCTAACC 3422 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||||||| Sbjct 3423 AACTGAGCTACGAAAGC 3439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547024508601000