Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1067 122 8e-23 seq168 122 8e-23 seq19 118 9e-22 seq6 100 2e-16 seq420 93.3 4e-14 seq343 86.0 5e-12 >seq1067 Length=57296 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || ||||| ||||| || Sbjct 37395 ATGCAGATTTTTGTCAAGACGCTTACAGGAAAGACCATCACCCTTGAGGTGGAGAGCTCA 37336 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| ||| ||||||||||| || || || || || || || Sbjct 37335 GACACGATTGATAACGTCAAGGCAAAGATTCAAGACAAGGAGGGAATCCCCCCTGACCAG 37276 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || ||||| | ||||| || ||| || | ||||| ||| Sbjct 37275 CAGCGGCTGATTTTCGCTGGGAAACAGCTCGAAGATGGTAGGACTCTTGCGGATTATAAC 37216 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| |||||| | || | || |||| || |||||||||| Sbjct 37215 ATCCAGAAGGAATCGACCCTTCACCTTGTGCTGCGCCTGAGGGGTGGCAT 37166 >seq168 Length=274740 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | || ||| | ||||| || || Sbjct 146156 ATGCAGATTTTCGTGAAGACCTTGACCGGAAAGACCATCACTTTGGAAGTCGAGAGCTCG 146097 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| ||||| || || || || || || || Sbjct 146096 GACACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAGGGTATCCCCCCAGACCAG 146037 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||| || | || || | |||| || | || |||||| Sbjct 146036 CAGAGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCAGACTACAAC 145977 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||||||| | || ||||| ||||| |||| ||||| || Sbjct 145976 ATTCAGAAGGAGTCGACCCTTCACTTGGTGCTGCGTCTGCGTGGTGGTAT 145927 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || | || || ||| ||| Sbjct 146384 ATGCAGATTTTTGTTAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCC 146325 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||| || ||||| ||||| || || Sbjct 146324 GACACCATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 146265 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||||||| | || || | ||| | | || |||||| Sbjct 146264 CAGAGGTTGATCTTTGCGGGCAAACAACTCGAGGATGGACGTACCCTGGCTGACTACAAC 146205 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| |||||| | || ||||| || Sbjct 146204 ATCCAGAAGGAGTCAACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGAAT 146155 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| ||||||||| | || || || || |||||| || Sbjct 147068 ATGCAGATCTTCGTGAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 147009 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||||||||| || || || ||||| || || Sbjct 147008 GACACCATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAG 146949 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||||||| | || ||| | ||| | | || |||||| Sbjct 146948 CAGAGGCTGATCTTCGCCGGCAAACAGCTTGAGGACGGCCGAACCCTCGCTGACTACAAC 146889 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | || | || ||||| || Sbjct 146888 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTCCGTGGTGGGAT 146839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || || ||||| || | || || | || || ||| ||| Sbjct 146612 ATGCAAATATTTGTCAAGACCCTCACCGGGAAAACCATCACCTTGGAGGTAGAAAGCTCC 146553 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || || ||||| || ||||| || || || || Sbjct 146552 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 146493 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||| || || | || || | ||| | |||| |||||| Sbjct 146492 CAGAGATTGATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTACAAC 146433 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || ||| | || ||||| | ||| | || ||||| || Sbjct 146432 ATTCAGAAAGAATCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGGAT 146383 >seq19 Length=713669 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || ||||| || || || ||| Sbjct 623972 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCC 623913 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| || || || || || || || Sbjct 623912 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCTCCGGACCAG 623853 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| | |||| | ||||||||||| Sbjct 623852 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGATTACAAC 623793 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| |||| | ||| | || || || || Sbjct 623792 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTCCGTGGAGGTAT 623743 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||| ||| | || || || ||||| || || Sbjct 623744 ATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACGATAACCCTAGAAGTCGAGAGCTCT 623685 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || || || ||||| || || || || || Sbjct 623684 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCGCCGGACCAG 623625 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||| || ||||| ||| || ||| | ||||||||||| Sbjct 623624 CAGAGGCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGTCGCACCCTCGCCGATTACAAC 623565 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || ||||||||||| | ||| |||| Sbjct 623564 ATCCAGAAGGAGTCGACGCTGCATCTGGT 623536 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||||||| | || ||||| || || || ||| Sbjct 628933 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATAACTCTCGAGGTCGAGAGCTCC 628874 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| ||||| || || || || || Sbjct 628873 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGACCAG 628814 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | |||||| | |||| | ||||||||||| Sbjct 628813 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGGACCCTCGCCGATTACAAC 628754 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || |||| | ||| | || || ||| Sbjct 628753 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGTCTTCGCGGCGGC 628706 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || ||||| ||| | || || || || ||||| ||| Sbjct 623516 ATGCAGATATTTGTGAAAACCCTAACCGGAAAGACGATCACCCTGGAGGTGGAGAGCTCC 623457 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || || || ||||| || || || || || Sbjct 623456 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCGGACCAG 623397 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| ||| | ||| | |||| |||||| Sbjct 623396 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGAACCCTCGCCGACTACAAC 623337 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||| || | ||| |||| | ||| | || || || || Sbjct 623336 ATCCAGAAGGAGAGCACTCTTCATCTGGTGCTCCGTCTCCGTGGAGGGAT 623287 >seq6 Length=1122688 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || ||||| || || || ||| | || || | || || || | Sbjct 399343 GCCATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCTTGGAGGTCGAGTCC 399284 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | || || | ||||| || || |||||||| || || || || ||||| Sbjct 399283 TCCGACACTATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCCGAC 399224 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | |||||| || || | || ||| | |||| | |||| ||| Sbjct 399223 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTCGCCGACTAC 399164 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||| || |||||||| || | || |||||| Sbjct 399163 AACATCCAGAAGGAGTCCACGCTTCACTTGGTT 399131 >seq420 Length=153407 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || || || ||| | || || || || || || | | Sbjct 119323 CCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTTGAGTCCT 119264 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||| | || || | || || || || || ||||| || || || || || || | Sbjct 119263 CCGACACCATCGACAATGTGAAGACCAAGATCCAGGACAAGGAGGGAATCCCGCCGGACC 119204 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || | || ||| | |||| | |||| |||| Sbjct 119203 AGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGACTACA 119144 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || ||||||||||| Sbjct 119143 ACATCCAGAAGGAGTCGAC 119125 >seq343 Length=177656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27076 TTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAAT 27135 |||| ||||| ||||| || || || ||||| ||| | || || | || || || |||| Sbjct 100847 TTCAGGACAAGGAAGGAATTCCTCCGGATCAGCAGAGATTGATTTTTGCTGGGAAGCAAT 100788 Query 27136 TGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGG 27195 ||||||| | ||| || | |||||||||||||| |||||||| || | ||| ||| Sbjct 100787 TGGAAGATGGGAGGACTCTTGCGGATTACAACATTCAGAAGGAGTCAACTCTTCATCTGG 100728 Query 27196 TTTTG 27200 ||||| Sbjct 100727 TTTTG 100723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434766205742400