Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq716 165 1e-35 seq168 122 1e-22 >seq716 Length=92840 Score = 165 bits (182), Expect = 1e-35 Identities = 204/279 (73%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 176574 TGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCA 176633 |||||||||||| || || || |||| |||||||||||| ||||||| ||||| ||||| Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 176634 CAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCT 176693 | | || || ||||||||||| | |||| | || ||||| ||||| || || || || || Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 176694 TTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAA 176753 ||| || || || || | || || ||| | | || | || || ||||| Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 176754 CGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGC 176813 ||||| || | ||||||| |||||| ||||| ||||| || || || |||||||| Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 176814 TGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGC 176852 || || ||||| ||||| || | |||||||| ||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq168 Length=274740 Score = 122 bits (134), Expect = 1e-22 Identities = 144/194 (74%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||||||| | | ||| || ||| ||||| || ||| | || ||||| || ||| Sbjct 245244 ATTTGGTTTACT-CTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGGTTTTAATTTC 245302 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 || || | ||| | || | | ||| || ||| ||| | || ||||| ||||| Sbjct 245303 AATCAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAATATCATTAAC 245362 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| || |||||||||||||||||||| || ||||||||||| |||||| | || ||| Sbjct 245363 CGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCTCTCTAGAC 245422 Query 177091 CTTGCTGCTGCAGA 177104 || || |||| ||| Sbjct 245423 CTAGCGGCTGTAGA 245436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603283214678400