Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq716 183 4e-41 seq37 170 2e-37 seq1 167 3e-36 seq395 125 9e-24 seq257 111 2e-19 seq421 109 7e-19 seq168 109 7e-19 seq793 102 1e-16 seq129 96.9 4e-15 seq342 95.1 2e-14 seq187 91.5 2e-13 seq549 89.7 6e-13 >seq716 Length=92840 Score = 183 bits (202), Expect = 4e-41 Identities = 208/279 (75%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 190126 TGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACA 190185 |||||||||| |||| ||||| |||| |||||||| ||| ||||||| ||||| || || Sbjct 34196 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTTCAAGCTGAGCA 34137 Query 190186 TAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCATT 190245 ||||||||||||||||||| | |||| ||||||||| ||| | || || || | | Sbjct 34136 CTATATCCTTATGCACCCATTTCTTATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCT 34077 Query 190246 ATTCTCTGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAAACAACTGGTTT 190305 |||| ||| || |||||||| | ||||| ||| | | || || |||| || | Sbjct 34076 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATAAGGAAAACCACAGAAAA 34017 Query 190306 AGAGTCACAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGC 190365 || || || | ||||||| || || ||||| |||||||| || || || ||||| Sbjct 34016 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGC 33957 Query 190366 TGCTCATGGTTACTTTGGTAGACTTATCTTCCAGTATGC 190404 ||||||||||| ||||| || | |||||||| ||||| Sbjct 33956 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 33918 >seq37 Length=561398 Score = 170 bits (188), Expect = 2e-37 Identities = 187/246 (76%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || || || |||| ||| || || || || || |||||||| | || Sbjct 544864 AATGTCACATTCAGTAAAGATTTATGTTACGTGTATAGGGTGTACTCAATGTGTCCAAGC 544923 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 |||||| ||||||||||||||| ||||||||||||| ||||| || ||||| || Sbjct 544924 TTGTCCCACAGATGTATTAGAAATGAAAACTTGGGATGGGTGTAAAGCTAAACAAATAGC 544983 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| | || ||||| ||||| ||||| || ||||| |||||||| | || |||| || Sbjct 544984 TTCTGCTCCAAGAACAGAGGACTGTGTGGGTTGTAAAAGATGTGACTCTGCCTGTCTAAC 545043 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-GAAACCACAAGAAGCATGGGTCTAG 182723 || || || ||| |||| ||||| ||| | ||| ||||| || |||| |||||||||| Sbjct 545044 GGATTTCTTGAGTGTTCGAGTTTATTTGTG-GCATGAAACAACTCGAAGTATGGGTCTAG 545102 Query 182724 CATATT 182729 | |||| Sbjct 545103 CTTATT 545108 >seq1 Length=1764766 Score = 167 bits (184), Expect = 3e-36 Identities = 253/360 (70%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 191476 ATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATCACTGCAAACAGATTCTGGTC 191535 |||| | ||||| || | ||| ||||||||||| ||| | || || ||| | || ||||| Sbjct 983310 ATTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 983251 Query 191536 ACAGATATTTGGTATTGCATTCTCTAACAAAAGATTTCTACACTTCTTGATGTTGTTTGT 191595 || || ||||| |||| || || || ||| | | |||| ||||| ||||| ||||| Sbjct 983250 CCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 983191 Query 191596 TCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGCACTTAACTTAAG 191655 || |||| || | |||| | | || | || ||||| || | || || | Sbjct 983190 ACCAGTAACTGGTTTATGGATGAGTGCTTTTGGAGTAGTCGGTCTGGCTTTGAATCTACG 983131 Query 191656 AGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTT 191715 || ||||| || || |||||||| || | ||||| ||||| || || ||||| || | Sbjct 983130 TGCCTATGACTTCGTTTCTCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTG 983071 Query 191716 CTATACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCTTCAGTAGACCA 191775 ||| || || || ||||| | || || ||||| | || |||||| | | ||| || Sbjct 983070 CTACACCAAAAATATTCTCTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 983011 Query 191776 ACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTACCTAGAGGAAATGCATTGTAATT 191835 |||||||| |||||| | ||||| ||||| |||||| || | ||||| || | ||||| Sbjct 983010 GCCTCATGAAAACTTTATATTCCCTGAGGAGGTTCTATCTCGTGGAAACGCTCTTTAATT 982951 >seq395 Length=160260 Score = 125 bits (138), Expect = 9e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 182498 GTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCTTG-TCCATTGGA 182556 || || || |||| ||| || || || || || |||||||| | ||||| |||| | Sbjct 135455 GTAAAGATTTATGCTACGTGTATAGGGTGTACTCAATGTGTCCAAGCTTGCTCCACAT-A 135397 Query 182557 TGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAG 182616 ||||||||||||| | ||| ||||||||| ||||| || ||||| ||||| | || || Sbjct 135396 TGTATTAGAAATGATATCTTAGGATGGGTGTAAAGCTAAACAAATAGCTTCTGCTCCAAG 135337 Query 182617 AACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTAAG 182676 ||| ||||| ||||| ||||| ||||||||| | || ||||| ||||| || || || Sbjct 135336 AACAGAGGACTGTGTGAATTGTAAAAGATGTGAATCTGCCTGTCCAACAGATTTCTTGAG 135277 Query 182677 TATTCG 182682 | |||| Sbjct 135276 TGTTCG 135271 >seq257 Length=213233 Score = 111 bits (122), Expect = 2e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 191218 TGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGAGT 191277 ||||||| | || |||||| |||||| |||||||||||||||| ||||| || Sbjct 14444 TGTATTCCTGATTTATCCATAAGGTCAGTTTGGTTGGTTCTTTGCACCCAATTTTGGTGT 14385 Query 191278 TGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACACTCAACCC 191337 ||||| || ||| ||| || ||||| | ||||| || | ||| ||| | ||| | Sbjct 14384 AGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTTATAATTGGACATTGAACTC 14325 Query 191338 TTTCCACATGATGGGAGTTGC--AGGTATTCTAGGTGGAGCATTACTATGTGCCATTCAT 191395 || ||||||||||||||||| |||||| | |||| || | |||||||| |||||| Sbjct 14324 ATTTCACATGATGGGAGTTGCCGAGGTAT--TGGGTGCTGCTATGCTATGTGCTATTCAT 14267 Query 191396 GGTGCTACAGTACAGAACACCTTGTATGAGGA 191427 | |||| || | || ||||| | ||| || Sbjct 14266 GACACTACCATAGAAAATACCTTATTTGAAGA 14235 >seq421 Length=153368 Score = 109 bits (120), Expect = 7e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 186467 TGGATGAGTGCTATGAATGATCAAACAAACAGTCTGTTTCTACCAATAGGACCTGCTGAT 186526 ||| | | |||||| ||||| | | || || ||| || |||||||| | | || Sbjct 49325 TGGTTAAATGCTATTAATGAAAATAGTAATTCACTATTTTTAACAATAGGATCCGAAGAC 49384 Query 186527 TTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAACTTTAATCCTAGTCAAG 186586 || || ||||||||| ||||||| || || |||||| | || | || ||| |||| || Sbjct 49385 TTTTTGGTTCATCATACTATTGCTCTAGGTTTACATTCAACTATATTGATCTTAGTAAAT 49444 Query 186587 GGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCA 186646 | || |||||||| | | || || | || ||||||| || ||||| || ||| Sbjct 49445 GTGGCTTTAGATGCACGTGACTCCAAGTTAATGCCAGATATAAAGGATTTTGGTTATAGT 49504 Query 186647 TTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATA 186686 || |||||||||||||| | ||| ||||||||||||| Sbjct 49505 TTTCCTTGTGATGGTCCGAGACGAGACGGTACTTGTGATA 49544 >seq168 Length=274740 Score = 109 bits (120), Expect = 7e-19 Identities = 134/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 190466 TGGTTAACATCAATGGGTATTTGCACAATGGCATTCAACTTAAATGGTTTCAACTTTAAC 190525 ||||| || || | |||||| ||| ||||| || |||||||||||||| || || || Sbjct 245247 TGGTTTAC-TCTTTAGGTATTAGCATCATGGCTTTTAACTTAAATGGTTTTAATTTCAAT 245305 Query 190526 CAGTCTGTAGTTGATGCACAAGGTAAAATTGTTCCAACATGGGGCGATGTTCTTAACAGA 190585 || | |||||||||| ||||| | || || | || || | ||||| | Sbjct 245306 CAATTTGTAGTTGATAGTTAAGGTCGTGTAATTAATACCTAGGTTAATATCATTAACCGT 245365 Query 190586 GCAAACCTTGGTATGGAAGTAATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTA 190645 || || |||||||||||||| ||||||||| | ||||| || |||||| | ||||||||| Sbjct 245366 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCTCTCTAGACCTA 245425 Query 190646 GC 190647 || Sbjct 245426 GC 245427 >seq793 Length=83070 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 182581 TGGGTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAA 182640 |||||| ||||| || ||||| ||||| | || ||||| ||| ||||||| || ||||| Sbjct 12745 TGGGTGTAAAGCTAAACAAATAGCTTCTGCTCCAAGAACAGAGTATTGTGTGGGTTGTAA 12686 Query 182641 GAGATGTGAAACAGCATGTCCTACAGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-G 182699 |||| |||| | || ||||| || || ||||| || |||| |||| || | ||| | Sbjct 12685 AAGATCTGAATCTGCCTGTCCAACTGATTTTTTGCGTGTTCGAGTTTTTTTATG-GCATG 12627 Query 182700 AAACCACAAGAAGCATGGGTCTAGCATATT 182729 |||| || || | ||||||||||| |||| Sbjct 12626 AAACAACTCGATGTATGGGTCTAGCTTATT 12597 >seq129 Length=316778 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 184091 AACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATT 184150 || |||||||| || |||||||| ||| | ||||||||| | |||||||| ||||||| | Sbjct 41335 AATTGGGTATGTATATTTTTAGGCTTTTACAGTTTTGGTTTGTATATTCATAATGATACT 41394 Query 184151 ATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTACAACCT 184210 ||||| || || || | | | ||| | || ||||| || |||||||||||||| Sbjct 41395 ATGAGCGCTTTAGGGCGTTCCCAAGATATGTTTTCAGATACCGCTATACAATTACAACCC 41454 Query 184211 GTATTTGCACA 184221 || ||||| || Sbjct 41455 GTCTTTGCTCA 41465 >seq342 Length=178324 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 184314 CTTTTGTACTAGGTACAGCAGACTTTATGATACATCACATACACGCTTTCCAGATTCATG 184373 || || || |||| || ||||| ||| || | |||||||| || || || |||||||| Sbjct 82537 CTATTTTATTAGGAACTGCAGATTTT-TGGTCCATCACATTCATGCATTTACGATTCATG 82479 Query 184374 TTTGTGTATTAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACCAG 184433 | ||||| || |||| || |||||||||| || | | || | || ||||||| Sbjct 82478 TGACGGTATTGATATTTCTTAAAGGTGTTTTATTTGCTCGTAGCTTGCGTTTGATACCAG 82419 Query 184434 ATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGGAGGCACTTGT 184492 |||| || || | | || || |||||||||||||| || || ||||| || || ||| Sbjct 82418 ATAA-AGCAAATATTGGTTTTCTTTTCCCTTGTGATGGACCCGGAAGAGGGGGGACATGT 82360 Query 184493 CAGGTATC 184500 || ||||| Sbjct 82359 CAAGTATC 82352 >seq187 Length=262323 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 186507 TACCAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTA 186566 || ||| |||||| | || || || ||||||||||||||||| || | ||||||| | Sbjct 214960 TAACAACAGGACCCGGAGACTTTTTGGTTCATCATGCTATTGCTCTAAGTTTACATATAA 215019 Query 186567 CAACTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATA 186626 | || || ||| |||| ||||| || |||||||| | || || || | || ||||||| Sbjct 215020 CTACATTGATCTTAGTAAAGGGGGCTTTAGATGCATGTGGCTCCAAGTTAATGCCAGATA 215079 Query 186627 AGAAAGATTT 186636 | || ||||| Sbjct 215080 AAAAGGATTT 215089 >seq549 Length=120542 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 186152 TTTTTTGTTAGAGACTTTGATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGCTA 186211 |||||| ||||||| | |||| | | || | | || ||||| | | |||||| || Sbjct 107819 TTTTTTATTAGAGATTACAATCCGAAACAGATTGAAGATAATGTATTGGCAAGAATGTTA 107760 Query 186212 CAGCACAAAGAAGCAATTATAAGTCACTTAAGTTGGG-TATCACTATTCCTTGGATTCCA 186270 | || |||||||| || ||| || |||||||||| || | || || || || ||||| Sbjct 107759 GACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGCTAGC-CTCTTTCTAGGTTTCCA 107701 Query 186271 TACTTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGT 186316 |||||| ||| | ||||| ||||||||||| | | || |||||| Sbjct 107700 TACTTTGGGATTTTATGTTCATAATGATGTCATGCTTGCTTTTGGT 107655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631206239944200