Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq19 102 6e-17 seq168 84.2 2e-11 >seq19 Length=713669 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || || || || || || |||| ||||| ||| || Sbjct 623288 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACGATCACCCTTGAGGTCGAGAGCTCC 623229 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || ||||| |||||| |||| ||| | Sbjct 623228 GACACCATCGACAAC--GTGAAAGCCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACC 623171 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| ||||| | || |||| |||| | | | || |||| Sbjct 623170 AGCAGAGGCTTATCTTCGCCGGGAAACAGCTTGAGGACGGTCGCACCCTCGCGGACTACA 623111 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||||||||| | ||| |||| | ||| | ||||| || Sbjct 623110 ACATCCAGAAGGAGAGCACTCTCCATCTGGTGCTCCGTCTCCGTGGTGG 623062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || || | || || || ||| || Sbjct 623516 ATGCAGATATTTGTGAAAACCCTAACCGGAAAGACGATCACCCTGGAGGTGGAGAGCTCC 623457 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || || || ||||| |||| ||| | Sbjct 623456 GACACCATCGACAAC--GTCAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCGGACC 623399 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| || |||| |||| || | | | |||| |||| Sbjct 623398 AGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGAACCCTCGCCGACTACA 623339 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||||||||| | ||| |||| | ||| | ||||| || Sbjct 623338 ACATCCAGAAGGAGAGCACTCTTCATCTGGTGCTCCGTCTCCGTGGAGG 623290 >seq168 Length=274740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || ||||| || || || || || | || || |||||| || Sbjct 146384 ATGCAGATTTTTGTTAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCC 146325 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || || | || || | Sbjct 146324 GACACCATTGACAAT--GTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACC 146267 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || |||||| | || || | ||| | | || | || |||| Sbjct 146266 AGCAGAGGTTGATCTTTGCGGGCAAACAACTCGAGGATGGACGTACCCTGGCTGACTACA 146207 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| |||||| | ||||| || Sbjct 146206 ACATCCAGAAGGAGTCAACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 146158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355740983641365