Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq168 109 5e-19 seq6 98.7 9e-16 seq19 95.1 1e-14 seq207 87.8 2e-12 >seq168 Length=274740 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || || || ||||| || ||||| |||| || Sbjct 146631 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGCCCGTCCTC 146690 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || || | ||||||||| | ||| | || ||| |||||| Sbjct 146691 GAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 146750 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| |||| ||| | || | | ||| ||| || || | ||||| ||| Sbjct 146751 GATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTTT 146809 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || || || || ||||| |||||||||||| Sbjct 146810 TCCCGGTGAGGGTCTTAACGAAGATTTGCATC 146841 >seq6 Length=1122688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | ||| | ||||| || |||||| ||| || || || || || ||||| Sbjct 399114 CCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 399173 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || || || || || ||||||||||||| || Sbjct 399174 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 399233 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| ||||| ||| || |||| | | | || ||| ||||| || Sbjct 399234 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGACC 399293 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | |||||||| || ||||| || ||||| ||||| Sbjct 399294 TCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq19 Length=713669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || |||||||| || || || || || ||||| || ||||| |||| || Sbjct 623307 CACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTC 623366 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | || | | || || ||| Sbjct 623367 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTG 623426 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || ||| |||||| |||| ||||| | | Sbjct 623427 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCT 623485 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || ||||| ||||| || ||||| Sbjct 623486 TTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || |||||||| || || || || || || || || || || |||| || Sbjct 623079 CACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTC 623138 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||| || || || ||||| | ||||||||| | ||| | | || |||||| Sbjct 623139 AAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTG 623198 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || ||| | ||| | | | || ||| ||| || || | ||||| | | Sbjct 623199 GATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCT 623257 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || || || ||||| ||||| || |||||| Sbjct 623258 TGCCGGTGAGGGTTTTCACAAAAATCTGCATC 623289 >seq207 Length=245090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | |||| || || ||| ||| || || || || || ||||| Sbjct 172639 CCTCCCCTGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 172580 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| || ||||| || || ||||| || |||||||||||||| | || Sbjct 172579 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGA 172520 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| || ||| ||| ||| || | | | | || || ||||| || Sbjct 172519 ATCCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGACC 172460 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||| ||||||||| Sbjct 172459 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 172409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429399043739435