Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq168 107 1e-18 seq1067 102 6e-17 seq19 95.1 8e-15 seq68 84.2 1e-11 >seq168 Length=274740 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || ||||| ||||| ||||| ||||| | | Sbjct 146840 ATGCAAATCTTCGTTAAGACCCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGCTCC 146781 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| ||||| || || | || ||||| || Sbjct 146780 GACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 146721 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || || |||| || || | | ||| |||||| Sbjct 146720 CAGAGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGAACCCTCGCCGACTACAAC 146661 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| | ||||| || Sbjct 146660 ATCCAGAAGGAGTCCACCCTCCATTTGGT 146632 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || ||||| ||||| || ||||| | || ||||| | | Sbjct 146384 ATGCAGATTTTTGTTAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCC 146325 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || || | || ||||| || Sbjct 146324 GACACCATTGACAATGTCAAGGCCAAGA-TTCAAGACAAGGAGGGCATCCCACCAGACCA 146266 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| ||||||||||| || || | ||| || | | || ||||| Sbjct 146265 GCAGAGGTTGATCTTTGCGGGCAAACAACTCGAGGATGGACGTACCCTGGCTGACTACAA 146206 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 146205 CATCCAGAAGGAGTCAAC 146188 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| ||||| || || || ||||| ||||| || || | | Sbjct 147068 ATGCAGATCTTCGTGAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 147009 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | || ||||| || ||| | || || || || Sbjct 147008 GACACCATCGATAATGTCAAAGCTAAGA-TTCAAGACAAGGAGGGTATCCCACCGGACCA 146950 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||||||||| || || |||| || || | | || ||||| Sbjct 146949 GCAGAGGCTGATCTTCGCCGGCAAACAGCTTGAGGACGGCCGAACCCTCGCTGACTACAA 146890 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 146889 CATCCAGAAGGAGTCCAC 146872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||| | || ||||| || |||||| | ||||| || | | Sbjct 146157 AATGCAGATTTTCGTGAAGACCTTGACCGGAAAGACCATCACTTTGGAAGTCGAGAGCTC 146098 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || |||||| ||||| || ||| | || ||||| || Sbjct 146097 GGACACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAGGGTATCCCCCCAGACCA 146038 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || |||||||| || || || || | | || | | || ||||| Sbjct 146037 GCAGAGGTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCAGACTACAA 145978 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 145977 CATTCAGAAGGAGTCGAC 145960 >seq1067 Length=57296 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || |||||||| | || || || | || Sbjct 37167 ATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 37108 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||||| || ||| | || | |||| || ||||| || || | |||||||| || Sbjct 37107 GACACTGTCGACAATGTGAAGGCGAAAA-TTCAGGACAAGGAGGGCATCCCGCCAGACCA 37049 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || |||| || | | | ||||| | |||||||| Sbjct 37048 GCAGAGGTTGATTTTTGCAGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTACAA 36989 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 36988 CATTCAGAAGGAGTCCAC 36971 >seq19 Length=713669 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| ||||||||||| || || || ||||||||||| || || | Sbjct 623975 AATATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGC 623916 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 623915 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCTCCGGAC 623856 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || |||||||| || || || |||| || || | | ||||||| Sbjct 623855 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGATTAC 623796 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 623795 AACATCCAGAAGGAGTCTAC 623776 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || || |||||||| || || | Sbjct 628936 AATATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATAACTCTCGAGGTCGAGAGC 628877 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| ||||| | ||||| || Sbjct 628876 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGAC 628817 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || || || || || ||||||| || || | | ||||||| Sbjct 628816 CAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGGACCCTCGCCGATTAC 628757 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 628756 AACATCCAGAAGGAGTCCAC 628737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||||||||| || |||||||| ||||| ||||| | | Sbjct 623061 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGAGCTC 623002 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || || ||||| || || | || || || || Sbjct 623001 GGACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGACCA 622942 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || |||| || | ||||| | | |||||||| Sbjct 622941 GCAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAGGATGGTCGCACCCTTGCTGATTACAA 622882 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 622881 TATCCAGAAGGAGTCTAC 622864 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||||||||| || || |||||||| || || || || | | Sbjct 623288 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACGATCACCCTTGAGGTCGAGAGCTCC 623229 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||| |||||| | || || || || Sbjct 623228 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGTATTCCCCCGGACCAG 623169 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| ||||| || || |||| ||||| | | || |||||| Sbjct 623168 CAGAGGCTTATCTTCGCCGGGAAACAGCTTGAGGACGGTCGCACCCTCGCGGACTACAAC 623109 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 623108 ATCCAGAAGGAG 623097 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || ||||| || || ||||| || | | Sbjct 623744 ATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACGATAACCCTAGAAGTCGAGAGCTCT 623685 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | ||||| || || Sbjct 623684 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCGCCGGACCAG 623625 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || |||| |||| ||||| | | |||||||||| Sbjct 623624 CAGAGGCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGTCGCACCCTCGCCGATTACAAC 623565 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 623564 ATCCAGAAGGAGTCGAC 623548 >seq68 Length=446562 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || ||||| |||||||| || || ||||| || |||||||| |||| || Sbjct 217978 AGGTATTCCTCCGGATCAGCAGCGTTTGATCTTCGCCGGGAAGCAACTGGAGGACGGTCG 217919 Query 23772 CACTTTAGGCGATTACAACATACAAAAAG 23800 |||||| | |||||||||||| || |||| Sbjct 217918 CACTTTGGCCGATTACAACATTCAGAAAG 217890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337894274821460