Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq143 87.8 2e-12 >seq143 Length=298601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 368/578 (64%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || | || || |||| || || ||||| || || ||||| Sbjct 58210 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGT 58151 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| | || || || || ||||| || || || ||| ||| || ||||| Sbjct 58150 CCCGGCATCAACCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAG 58091 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA--ACT-GGCTTCGTTGTGT 48317 || ||||| ||| || || ||| | || | ||| || | ||| || ||| | Sbjct 58090 ATCCCTTCGACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAGCCGTCG--- 58034 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| | ||||||||| || ||||| | || || || || Sbjct 58033 ATCCAGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCGG 57974 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||||| | | || || | ||| || | ||| || || | | || || |||||| Sbjct 57973 AAGAGGCGGCTCTTCTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACATT 57914 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || || ||||| || ||||| || | ||| || | || | Sbjct 57913 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGCGACC 57854 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || |||||| | || | | || | |||||| || || || || || || Sbjct 57853 TGGACCTCCTTCATGAACCCACCGGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCG 57794 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || || || | || || | || || | || |||| || || || | | | Sbjct 57793 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAGGGCTTCGAACTGG 57734 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 ||| || | || | || || || || || |||||||| || ||||| || || || Sbjct 57733 CGGATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGGCCTCGGCCTTCTTG 57674 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| | ||| || || ||| ||||| ||||| || Sbjct 57673 TACATCTCCCAGATCTCCGGGTACTGGATCGGGAACAT 57636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694425709336800